Cluster: MGYG000003399_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003399
- CGC Family ID: CGCFAM_05691
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003399_11 | MGYG000003399_11_121 | 145828 | 147423 | + | 2.A.14.2.1 |
| sulfatase | MGYG000003399_11 | MGYG000003399_11_122 | 147466 | 148605 | + | S1_6 |
| pfam | MGYG000003399_11 | MGYG000003399_11_123 | 148607 | 149416 | - | MoaF | MoaF_C |
| TC | MGYG000003399_11 | MGYG000003399_11_124 | 149453 | 150718 | - | 2.A.1.45.1 |
| pfam | MGYG000003399_11 | MGYG000003399_11_125 | 151390 | 152307 | + | Bac_luciferase |
| NULL(UNKNOWN) | MGYG000003399_11 | MGYG000003399_11_126 | 152466 | 152897 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003399_11 | MGYG000003399_11_127 | 152972 | 154447 | - | 2.A.15.1.3 |
| STP | MGYG000003399_11 | MGYG000003399_11_128 | 154606 | 155202 | + | TetR_N |
| TC | MGYG000003399_11 | MGYG000003399_11_129 | 155212 | 156984 | - | 3.A.1.210.9 |
| TF | MGYG000003399_11 | MGYG000003399_11_130 | 157163 | 158020 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000003399_11 | MGYG000003399_11_131 | 158055 | 158810 | - | CBM50 |
| TC | MGYG000003399_11 | MGYG000003399_11_132 | 158959 | 159528 | + | 9.B.36.1.1 |
Gene ID: MGYG000003399_11_121
Type: TC
Location: 145828 - 147423 (+)
Type: TC
Location: 145828 - 147423 (+)
Gene ID: MGYG000003399_11_122
Type: sulfatase
Location: 147466 - 148605 (+)
Type: sulfatase
Location: 147466 - 148605 (+)
Gene ID: MGYG000003399_11_123
Type: pfam
Location: 148607 - 149416 (-)
Type: pfam
Location: 148607 - 149416 (-)
Gene ID: MGYG000003399_11_124
Type: TC
Location: 149453 - 150718 (-)
Type: TC
Location: 149453 - 150718 (-)
Gene ID: MGYG000003399_11_125
Type: pfam
Location: 151390 - 152307 (+)
Type: pfam
Location: 151390 - 152307 (+)
Gene ID: MGYG000003399_11_126
Type:
Location: 152466 - 152897 (+)
Type:
Location: 152466 - 152897 (+)
Gene ID: MGYG000003399_11_127
Type: TC
Location: 152972 - 154447 (-)
Type: TC
Location: 152972 - 154447 (-)
Gene ID: MGYG000003399_11_128
Type: STP
Location: 154606 - 155202 (+)
Type: STP
Location: 154606 - 155202 (+)
Gene ID: MGYG000003399_11_129
Type: TC
Location: 155212 - 156984 (-)
Type: TC
Location: 155212 - 156984 (-)
Gene ID: MGYG000003399_11_130
Type: TF
Location: 157163 - 158020 (+)
Type: TF
Location: 157163 - 158020 (+)
Gene ID: MGYG000003399_11_131
Type: CAZyme
Location: 158055 - 158810 (-)
Type: CAZyme
Location: 158055 - 158810 (-)
Gene ID: MGYG000003399_11_132
Type: TC
Location: 158959 - 159528 (+)
Type: TC
Location: 158959 - 159528 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia ureilytica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003399_11_122 | vegetarian > vegan | 2.22593 | 0.02628 |