Cluster: MGYG000003390_CGC47
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003390
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003390_102 | MGYG000003390_102_161 | 177253 | 179550 | + | GH3 |
| TC | MGYG000003390_102 | MGYG000003390_102_162 | 179648 | 180565 | + | 3.A.1.12.15 |
| TC | MGYG000003390_102 | MGYG000003390_102_163 | 180587 | 181741 | + | 3.A.1.12.15 |
| TC | MGYG000003390_102 | MGYG000003390_102_164 | 181738 | 182685 | + | 3.A.1.12.15 |
| TC | MGYG000003390_102 | MGYG000003390_102_165 | 182669 | 183400 | + | 3.A.1.12.15 |
| NULL(UNKNOWN) | MGYG000003390_102 | MGYG000003390_102_166 | 183381 | 183488 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000003390_102 | MGYG000003390_102_167 | 183547 | 184278 | - | MerR |
| TC | MGYG000003390_102 | MGYG000003390_102_168 | 184496 | 186184 | + | 9.B.33.1.1 |
Gene ID: MGYG000003390_102_161
Type: CAZyme
Location: 177253 - 179550 (+)
Type: CAZyme
Location: 177253 - 179550 (+)
Gene ID: MGYG000003390_102_162
Type: TC
Location: 179648 - 180565 (+)
Type: TC
Location: 179648 - 180565 (+)
Gene ID: MGYG000003390_102_163
Type: TC
Location: 180587 - 181741 (+)
Type: TC
Location: 180587 - 181741 (+)
Gene ID: MGYG000003390_102_164
Type: TC
Location: 181738 - 182685 (+)
Type: TC
Location: 181738 - 182685 (+)
Gene ID: MGYG000003390_102_165
Type: TC
Location: 182669 - 183400 (+)
Type: TC
Location: 182669 - 183400 (+)
Gene ID: MGYG000003390_102_166
Type:
Location: 183381 - 183488 (-)
Type:
Location: 183381 - 183488 (-)
Gene ID: MGYG000003390_102_167
Type: TF
Location: 183547 - 184278 (-)
Type: TF
Location: 183547 - 184278 (-)
Gene ID: MGYG000003390_102_168
Type: TC
Location: 184496 - 186184 (+)
Type: TC
Location: 184496 - 186184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia vulneris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003390_102_162 | vegetarian > omnivore | 1.07341 | 0.03299 |
| MGYG000003390_102_162 | vegetarian > vegan | 1.30251 | 0.03094 |
| MGYG000003390_102_168 | vegetarian > vegan | 1.00296 | 0.03094 |