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Cluster: MGYG000003390_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme MGYG000003390_94 MGYG000003390_94_22 23452 25131 - CBM91 | GH43_11
TC MGYG000003390_94 MGYG000003390_94_23 25188 26642 - 2.A.2.3.2
TF MGYG000003390_94 MGYG000003390_94_24 26877 27719 + HTH_AraC
TC MGYG000003390_94 MGYG000003390_94_25 27758 28360 + 2.A.76.1.4
NULL(UNKNOWN) MGYG000003390_94 MGYG000003390_94_26 28363 28965 - NULL(UNKNOWN)
[View Structural Homologs]
TC MGYG000003390_94 MGYG000003390_94_27 28986 30674 - 5.A.1.1.1
pfam MGYG000003390_94 MGYG000003390_94_28 30650 30973 - CutA1
TC MGYG000003390_94 MGYG000003390_94_29 31086 32387 - 2.A.13.1.1
pfam MGYG000003390_94 MGYG000003390_94_30 32506 33942 - Lyase_1 | FumaraseC_C
pfam MGYG000003390_94 MGYG000003390_94_31 34246 34716 + FxsA
TC MGYG000003390_94 MGYG000003390_94_32 34754 35995 - 2.A.3.13.1
Gene ID: MGYG000003390_94_22
Type: CAZyme
Location: 23452 - 25131 (-)
Gene ID: MGYG000003390_94_23
Type: TC
Location: 25188 - 26642 (-)
Gene ID: MGYG000003390_94_24
Type: TF
Location: 26877 - 27719 (+)
Gene ID: MGYG000003390_94_25
Type: TC
Location: 27758 - 28360 (+)
Gene ID: MGYG000003390_94_26
Type:
Location: 28363 - 28965 (-)
Gene ID: MGYG000003390_94_27
Type: TC
Location: 28986 - 30674 (-)
Gene ID: MGYG000003390_94_28
Type: pfam
Location: 30650 - 30973 (-)
Gene ID: MGYG000003390_94_29
Type: TC
Location: 31086 - 32387 (-)
Gene ID: MGYG000003390_94_30
Type: pfam
Location: 32506 - 33942 (-)
Gene ID: MGYG000003390_94_31
Type: pfam
Location: 34246 - 34716 (+)
Gene ID: MGYG000003390_94_32
Type: TC
Location: 34754 - 35995 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
MGYG000003390_94_29 vegetarian > omnivore 2.25499 0.03299
MGYG000003390_94_29 vegetarian > vegan 1.66045 0.03094

🧭 Explore Read Mapping of CGC

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