Cluster: MGYG000003390_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003390
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003390_18 | MGYG000003390_18_134 | 150455 | 151345 | + | 3.A.1.1.11 |
| TC | MGYG000003390_18 | MGYG000003390_18_135 | 151338 | 152240 | + | 3.A.1.1.11 |
| TC | MGYG000003390_18 | MGYG000003390_18_136 | 152253 | 153380 | + | 3.A.1.1.11 |
| TC | MGYG000003390_18 | MGYG000003390_18_137 | 153394 | 154683 | + | 3.A.1.1.11 |
| TC | MGYG000003390_18 | MGYG000003390_18_138 | 154726 | 156084 | - | 2.A.1.1.2 |
| pfam | MGYG000003390_18 | MGYG000003390_18_139 | 156487 | 157248 | - | adh_short | adh_short_C2 |
| pfam | MGYG000003390_18 | MGYG000003390_18_140 | 157310 | 158146 | - | KduI |
| CAZyme | MGYG000003390_18 | MGYG000003390_18_141 | 158637 | 159812 | + | PL22 | PL22 |
| TC | MGYG000003390_18 | MGYG000003390_18_142 | 159965 | 160645 | - | 1.B.35.1.5 |
| TC | MGYG000003390_18 | MGYG000003390_18_143 | 161022 | 161834 | - | 3.A.1.24.2 |
| TC | MGYG000003390_18 | MGYG000003390_18_144 | 161863 | 162531 | - | 3.A.1.24.2 |
| TC | MGYG000003390_18 | MGYG000003390_18_145 | 162524 | 163546 | - | 3.A.1.24.2 |
Gene ID: MGYG000003390_18_134
Type: TC
Location: 150455 - 151345 (+)
Type: TC
Location: 150455 - 151345 (+)
Gene ID: MGYG000003390_18_135
Type: TC
Location: 151338 - 152240 (+)
Type: TC
Location: 151338 - 152240 (+)
Gene ID: MGYG000003390_18_136
Type: TC
Location: 152253 - 153380 (+)
Type: TC
Location: 152253 - 153380 (+)
Gene ID: MGYG000003390_18_137
Type: TC
Location: 153394 - 154683 (+)
Type: TC
Location: 153394 - 154683 (+)
Gene ID: MGYG000003390_18_138
Type: TC
Location: 154726 - 156084 (-)
Type: TC
Location: 154726 - 156084 (-)
Gene ID: MGYG000003390_18_139
Type: pfam
Location: 156487 - 157248 (-)
Type: pfam
Location: 156487 - 157248 (-)
Gene ID: MGYG000003390_18_140
Type: pfam
Location: 157310 - 158146 (-)
Type: pfam
Location: 157310 - 158146 (-)
Gene ID: MGYG000003390_18_141
Type: CAZyme
Location: 158637 - 159812 (+)
Type: CAZyme
Location: 158637 - 159812 (+)
Gene ID: MGYG000003390_18_142
Type: TC
Location: 159965 - 160645 (-)
Type: TC
Location: 159965 - 160645 (-)
Gene ID: MGYG000003390_18_143
Type: TC
Location: 161022 - 161834 (-)
Type: TC
Location: 161022 - 161834 (-)
Gene ID: MGYG000003390_18_144
Type: TC
Location: 161863 - 162531 (-)
Type: TC
Location: 161863 - 162531 (-)
Gene ID: MGYG000003390_18_145
Type: TC
Location: 162524 - 163546 (-)
Type: TC
Location: 162524 - 163546 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia vulneris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003390_18_136 | vegan > omnivore | 1.33891 | 0.00957 |
| MGYG000003390_18_136 | vegetarian > omnivore | 1.70058 | 0.01548 |
| MGYG000003390_18_137 | vegetarian > omnivore | 1.44096 | 0.03299 |
| MGYG000003390_18_137 | vegetarian > vegan | 1.21288 | 0.03094 |
| MGYG000003390_18_140 | vegan > omnivore | 1.05336 | 0.01972 |
| MGYG000003390_18_144 | vegetarian > vegan | 2.03454 | 0.02526 |