Cluster: MGYG000003388_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003388
- CGC Family ID: CGCFAM_08532
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003388_6 | MGYG000003388_6_64 | 68968 | 70572 | - | 3.A.1.5.21 |
| TC | MGYG000003388_6 | MGYG000003388_6_65 | 70597 | 71505 | - | 3.A.1.5.22 |
| TC | MGYG000003388_6 | MGYG000003388_6_66 | 71578 | 72498 | - | 3.A.1.5.1 |
| peptidase | MGYG000003388_6 | MGYG000003388_6_67 | 72730 | 74526 | - | M24.UPB |
| TC | MGYG000003388_6 | MGYG000003388_6_68 | 74602 | 76221 | - | 3.A.1.5.1 |
| TC | MGYG000003388_6 | MGYG000003388_6_69 | 76549 | 77622 | + | 1.B.1.5.3 |
| pfam | MGYG000003388_6 | MGYG000003388_6_70 | 77750 | 79264 | + | Spermine_synth |
| pfam | MGYG000003388_6 | MGYG000003388_6_71 | 79431 | 79898 | + | FxsA |
| CAZyme | MGYG000003388_6 | MGYG000003388_6_72 | 80077 | 81924 | + | GH23 |
| pfam | MGYG000003388_6 | MGYG000003388_6_73 | 82202 | 82414 | + | Ribosomal_S21 |
| pfam | MGYG000003388_6 | MGYG000003388_6_74 | 82517 | 82963 | + | YqeY |
| TC | MGYG000003388_6 | MGYG000003388_6_75 | 83027 | 83893 | - | 3.B.1.1.5 |
Gene ID: MGYG000003388_6_64
Type: TC
Location: 68968 - 70572 (-)
Type: TC
Location: 68968 - 70572 (-)
Gene ID: MGYG000003388_6_65
Type: TC
Location: 70597 - 71505 (-)
Type: TC
Location: 70597 - 71505 (-)
Gene ID: MGYG000003388_6_66
Type: TC
Location: 71578 - 72498 (-)
Type: TC
Location: 71578 - 72498 (-)
Gene ID: MGYG000003388_6_67
Type: peptidase
Location: 72730 - 74526 (-)
Type: peptidase
Location: 72730 - 74526 (-)
Gene ID: MGYG000003388_6_68
Type: TC
Location: 74602 - 76221 (-)
Type: TC
Location: 74602 - 76221 (-)
Gene ID: MGYG000003388_6_69
Type: TC
Location: 76549 - 77622 (+)
Type: TC
Location: 76549 - 77622 (+)
Gene ID: MGYG000003388_6_70
Type: pfam
Location: 77750 - 79264 (+)
Type: pfam
Location: 77750 - 79264 (+)
Gene ID: MGYG000003388_6_71
Type: pfam
Location: 79431 - 79898 (+)
Type: pfam
Location: 79431 - 79898 (+)
Gene ID: MGYG000003388_6_72
Type: CAZyme
Location: 80077 - 81924 (+)
Type: CAZyme
Location: 80077 - 81924 (+)
Gene ID: MGYG000003388_6_73
Type: pfam
Location: 82202 - 82414 (+)
Type: pfam
Location: 82202 - 82414 (+)
Gene ID: MGYG000003388_6_74
Type: pfam
Location: 82517 - 82963 (+)
Type: pfam
Location: 82517 - 82963 (+)
Gene ID: MGYG000003388_6_75
Type: TC
Location: 83027 - 83893 (-)
Type: TC
Location: 83027 - 83893 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Neisseriaceae
Genus
Neisseria
Species
Neisseria perflava
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.