Cluster: MGYG000003388_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003388
- CGC Family ID: CGCFAM_08533
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003388_11 | MGYG000003388_11_202 | 200508 | 201071 | - | 3.D.1.8.1 |
| TC | MGYG000003388_11 | MGYG000003388_11_203 | 201271 | 203493 | - | 1.B.14.1.15 |
| TC | MGYG000003388_11 | MGYG000003388_11_204 | 203728 | 205494 | + | 3.A.1.203.4 |
| CAZyme | MGYG000003388_11 | MGYG000003388_11_205 | 205641 | 206366 | + | GT2 |
| pfam | MGYG000003388_11 | MGYG000003388_11_206 | 206371 | 207300 | + | Lip_A_acyltrans |
| pfam | MGYG000003388_11 | MGYG000003388_11_207 | 207327 | 207764 | + | Acyl-ACP_TE | 4HBT | 4HBT_2 |
| TC | MGYG000003388_11 | MGYG000003388_11_208 | 207868 | 209247 | + | 2.A.66.1.10 |
Gene ID: MGYG000003388_11_202
Type: TC
Location: 200508 - 201071 (-)
Type: TC
Location: 200508 - 201071 (-)
Gene ID: MGYG000003388_11_203
Type: TC
Location: 201271 - 203493 (-)
Type: TC
Location: 201271 - 203493 (-)
Gene ID: MGYG000003388_11_204
Type: TC
Location: 203728 - 205494 (+)
Type: TC
Location: 203728 - 205494 (+)
Gene ID: MGYG000003388_11_205
Type: CAZyme
Location: 205641 - 206366 (+)
Type: CAZyme
Location: 205641 - 206366 (+)
Gene ID: MGYG000003388_11_206
Type: pfam
Location: 206371 - 207300 (+)
Type: pfam
Location: 206371 - 207300 (+)
Gene ID: MGYG000003388_11_207
Type: pfam
Location: 207327 - 207764 (+)
Type: pfam
Location: 207327 - 207764 (+)
Gene ID: MGYG000003388_11_208
Type: TC
Location: 207868 - 209247 (+)
Type: TC
Location: 207868 - 209247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Neisseriaceae
Genus
Neisseria
Species
Neisseria perflava
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.