Cluster: MGYG000003379_CGC5
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003379
- CGC Family ID: CGCFAM_02885
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003379_6 | MGYG000003379_6_373 | 435573 | 436280 | + | 1.A.14.2.2 |
| TC | MGYG000003379_6 | MGYG000003379_6_374 | 436365 | 437333 | - | 4.D.2.4.3 |
| pfam | MGYG000003379_6 | MGYG000003379_6_375 | 437333 | 438577 | - | PLDc | PLDc_2 | PLDc_2 |
| pfam | MGYG000003379_6 | MGYG000003379_6_376 | 438574 | 439335 | - | Exo_endo_phos |
| TC | MGYG000003379_6 | MGYG000003379_6_377 | 439515 | 439907 | + | 9.B.15.1.1 |
| TC | MGYG000003379_6 | MGYG000003379_6_378 | 440126 | 441487 | + | 1.I.1.1.3 |
| pfam | MGYG000003379_6 | MGYG000003379_6_379 | 441490 | 442440 | + | Dus |
| TC | MGYG000003379_6 | MGYG000003379_6_380 | 442511 | 443701 | + | 2.A.1.46.7 |
| TC | MGYG000003379_6 | MGYG000003379_6_381 | 443714 | 445312 | - | 2.A.20.1.1 |
| peptidase | MGYG000003379_6 | MGYG000003379_6_382 | 445491 | 446600 | - | C82.A04 |
| CAZyme | MGYG000003379_6 | MGYG000003379_6_383 | 446798 | 448612 | - | GH15 |
| TC | MGYG000003379_6 | MGYG000003379_6_384 | 448689 | 449267 | - | 9.B.27.2.7 |
| TC | MGYG000003379_6 | MGYG000003379_6_385 | 449472 | 450059 | + | 9.B.29.3.1 |
| peptidase | MGYG000003379_6 | MGYG000003379_6_386 | 450237 | 451184 | + | S11.002 |
| TC | MGYG000003379_6 | MGYG000003379_6_387 | 451400 | 453841 | + | 1.A.23.1.2 |
| pfam | MGYG000003379_6 | MGYG000003379_6_388 | 453859 | 454353 | - | CHB_HEX |
| pfam | MGYG000003379_6 | MGYG000003379_6_389 | 454639 | 456342 | - | FAD_binding_4 | Lact-deh-memb |
| CAZyme | MGYG000003379_6 | MGYG000003379_6_390 | 456499 | 458796 | + | GH3 |
Gene ID: MGYG000003379_6_373
Type: TC
Location: 435573 - 436280 (+)
Type: TC
Location: 435573 - 436280 (+)
Gene ID: MGYG000003379_6_374
Type: TC
Location: 436365 - 437333 (-)
Type: TC
Location: 436365 - 437333 (-)
Gene ID: MGYG000003379_6_375
Type: pfam
Location: 437333 - 438577 (-)
Type: pfam
Location: 437333 - 438577 (-)
Gene ID: MGYG000003379_6_376
Type: pfam
Location: 438574 - 439335 (-)
Type: pfam
Location: 438574 - 439335 (-)
Gene ID: MGYG000003379_6_377
Type: TC
Location: 439515 - 439907 (+)
Type: TC
Location: 439515 - 439907 (+)
Gene ID: MGYG000003379_6_378
Type: TC
Location: 440126 - 441487 (+)
Type: TC
Location: 440126 - 441487 (+)
Gene ID: MGYG000003379_6_379
Type: pfam
Location: 441490 - 442440 (+)
Type: pfam
Location: 441490 - 442440 (+)
Gene ID: MGYG000003379_6_380
Type: TC
Location: 442511 - 443701 (+)
Type: TC
Location: 442511 - 443701 (+)
Gene ID: MGYG000003379_6_381
Type: TC
Location: 443714 - 445312 (-)
Type: TC
Location: 443714 - 445312 (-)
Gene ID: MGYG000003379_6_382
Type: peptidase
Location: 445491 - 446600 (-)
Type: peptidase
Location: 445491 - 446600 (-)
Gene ID: MGYG000003379_6_383
Type: CAZyme
Location: 446798 - 448612 (-)
Type: CAZyme
Location: 446798 - 448612 (-)
Gene ID: MGYG000003379_6_384
Type: TC
Location: 448689 - 449267 (-)
Type: TC
Location: 448689 - 449267 (-)
Gene ID: MGYG000003379_6_385
Type: TC
Location: 449472 - 450059 (+)
Type: TC
Location: 449472 - 450059 (+)
Gene ID: MGYG000003379_6_386
Type: peptidase
Location: 450237 - 451184 (+)
Type: peptidase
Location: 450237 - 451184 (+)
Gene ID: MGYG000003379_6_387
Type: TC
Location: 451400 - 453841 (+)
Type: TC
Location: 451400 - 453841 (+)
Gene ID: MGYG000003379_6_388
Type: pfam
Location: 453859 - 454353 (-)
Type: pfam
Location: 453859 - 454353 (-)
Gene ID: MGYG000003379_6_389
Type: pfam
Location: 454639 - 456342 (-)
Type: pfam
Location: 454639 - 456342 (-)
Gene ID: MGYG000003379_6_390
Type: CAZyme
Location: 456499 - 458796 (+)
Type: CAZyme
Location: 456499 - 458796 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea anthophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.