Cluster: MGYG000003379_CGC42
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003379
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003379_26 | MGYG000003379_26_313 | 318220 | 319686 | - | 2.A.1.6.4 |
| pfam | MGYG000003379_26 | MGYG000003379_26_314 | 320151 | 321170 | + | 2OG-FeII_Oxy | DIOX_N |
| TC | MGYG000003379_26 | MGYG000003379_26_315 | 321189 | 321995 | + | 3.A.1.24.5 |
| TC | MGYG000003379_26 | MGYG000003379_26_316 | 321988 | 322776 | + | 3.A.1.24.5 |
| TC | MGYG000003379_26 | MGYG000003379_26_317 | 322764 | 323432 | + | 3.A.1.24.5 |
| TC | MGYG000003379_26 | MGYG000003379_26_318 | 323708 | 323995 | + | 9.B.81.1.1 |
| pfam | MGYG000003379_26 | MGYG000003379_26_319 | 324277 | 324873 | + | Flavodoxin_2 | FMN_red |
| STP | MGYG000003379_26 | MGYG000003379_26_320 | 324870 | 325478 | + | TetR_N |
| TC | MGYG000003379_26 | MGYG000003379_26_321 | 325560 | 326450 | - | 3.A.1.1.1 |
| TC | MGYG000003379_26 | MGYG000003379_26_322 | 326557 | 328083 | - | 3.A.1.1.1 |
| TC | MGYG000003379_26 | MGYG000003379_26_323 | 328140 | 329330 | - | 3.A.1.1.1 |
| TC | MGYG000003379_26 | MGYG000003379_26_324 | 329693 | 330802 | + | 3.A.1.1.1 |
| TC | MGYG000003379_26 | MGYG000003379_26_325 | 330845 | 332146 | + | 1.B.3.1.1 |
| pfam | MGYG000003379_26 | MGYG000003379_26_326 | 332251 | 333192 | + | MalM |
| CAZyme | MGYG000003379_26 | MGYG000003379_26_327 | 333412 | 335481 | - | GH77 |
| CAZyme | MGYG000003379_26 | MGYG000003379_26_328 | 335490 | 337895 | - | GT35 |
Gene ID: MGYG000003379_26_313
Type: TC
Location: 318220 - 319686 (-)
Type: TC
Location: 318220 - 319686 (-)
Gene ID: MGYG000003379_26_314
Type: pfam
Location: 320151 - 321170 (+)
Type: pfam
Location: 320151 - 321170 (+)
Gene ID: MGYG000003379_26_315
Type: TC
Location: 321189 - 321995 (+)
Type: TC
Location: 321189 - 321995 (+)
Gene ID: MGYG000003379_26_316
Type: TC
Location: 321988 - 322776 (+)
Type: TC
Location: 321988 - 322776 (+)
Gene ID: MGYG000003379_26_317
Type: TC
Location: 322764 - 323432 (+)
Type: TC
Location: 322764 - 323432 (+)
Gene ID: MGYG000003379_26_318
Type: TC
Location: 323708 - 323995 (+)
Type: TC
Location: 323708 - 323995 (+)
Gene ID: MGYG000003379_26_319
Type: pfam
Location: 324277 - 324873 (+)
Type: pfam
Location: 324277 - 324873 (+)
Gene ID: MGYG000003379_26_320
Type: STP
Location: 324870 - 325478 (+)
Type: STP
Location: 324870 - 325478 (+)
Gene ID: MGYG000003379_26_321
Type: TC
Location: 325560 - 326450 (-)
Type: TC
Location: 325560 - 326450 (-)
Gene ID: MGYG000003379_26_322
Type: TC
Location: 326557 - 328083 (-)
Type: TC
Location: 326557 - 328083 (-)
Gene ID: MGYG000003379_26_323
Type: TC
Location: 328140 - 329330 (-)
Type: TC
Location: 328140 - 329330 (-)
Gene ID: MGYG000003379_26_324
Type: TC
Location: 329693 - 330802 (+)
Type: TC
Location: 329693 - 330802 (+)
Gene ID: MGYG000003379_26_325
Type: TC
Location: 330845 - 332146 (+)
Type: TC
Location: 330845 - 332146 (+)
Gene ID: MGYG000003379_26_326
Type: pfam
Location: 332251 - 333192 (+)
Type: pfam
Location: 332251 - 333192 (+)
Gene ID: MGYG000003379_26_327
Type: CAZyme
Location: 333412 - 335481 (-)
Type: CAZyme
Location: 333412 - 335481 (-)
Gene ID: MGYG000003379_26_328
Type: CAZyme
Location: 335490 - 337895 (-)
Type: CAZyme
Location: 335490 - 337895 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea anthophila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.