Cluster: MGYG000003377_CGC40
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003377
- CGC Family ID: CGCFAM_00426
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003377_73 | MGYG000003377_73_77 | 78102 | 79214 | + | 2.A.45.2.5 |
| TC | MGYG000003377_73 | MGYG000003377_73_78 | 79315 | 80412 | + | 2.A.1.3.36 |
| TC | MGYG000003377_73 | MGYG000003377_73_79 | 80409 | 81980 | + | 2.A.1.3.2 |
| TC | MGYG000003377_73 | MGYG000003377_73_80 | 81982 | 83505 | + | 1.B.17.3.8 |
| TC | MGYG000003377_73 | MGYG000003377_73_81 | 83608 | 84642 | + | 8.A.5.1.3 |
| CAZyme | MGYG000003377_73 | MGYG000003377_73_82 | 84836 | 86212 | + | GH1 |
| TC | MGYG000003377_73 | MGYG000003377_73_83 | 86250 | 87572 | + | 4.A.3.2.9 |
| TF | MGYG000003377_73 | MGYG000003377_73_84 | 87588 | 88304 | + | GntR |
| peptidase | MGYG000003377_73 | MGYG000003377_73_85 | 88350 | 89270 | - | C82.UPB |
| TC | MGYG000003377_73 | MGYG000003377_73_86 | 89486 | 91081 | + | 3.A.1.121.4 |
| CAZyme | MGYG000003377_73 | MGYG000003377_73_87 | 91206 | 93569 | - | GH31_2 |
| TC | MGYG000003377_73 | MGYG000003377_73_88 | 93585 | 94889 | - | 2.A.1.14.2 |
Gene ID: MGYG000003377_73_77
Type: TC
Location: 78102 - 79214 (+)
Type: TC
Location: 78102 - 79214 (+)
Gene ID: MGYG000003377_73_78
Type: TC
Location: 79315 - 80412 (+)
Type: TC
Location: 79315 - 80412 (+)
Gene ID: MGYG000003377_73_79
Type: TC
Location: 80409 - 81980 (+)
Type: TC
Location: 80409 - 81980 (+)
Gene ID: MGYG000003377_73_80
Type: TC
Location: 81982 - 83505 (+)
Type: TC
Location: 81982 - 83505 (+)
Gene ID: MGYG000003377_73_81
Type: TC
Location: 83608 - 84642 (+)
Type: TC
Location: 83608 - 84642 (+)
Gene ID: MGYG000003377_73_82
Type: CAZyme
Location: 84836 - 86212 (+)
Type: CAZyme
Location: 84836 - 86212 (+)
Gene ID: MGYG000003377_73_83
Type: TC
Location: 86250 - 87572 (+)
Type: TC
Location: 86250 - 87572 (+)
Gene ID: MGYG000003377_73_84
Type: TF
Location: 87588 - 88304 (+)
Type: TF
Location: 87588 - 88304 (+)
Gene ID: MGYG000003377_73_85
Type: peptidase
Location: 88350 - 89270 (-)
Type: peptidase
Location: 88350 - 89270 (-)
Gene ID: MGYG000003377_73_86
Type: TC
Location: 89486 - 91081 (+)
Type: TC
Location: 89486 - 91081 (+)
Gene ID: MGYG000003377_73_87
Type: CAZyme
Location: 91206 - 93569 (-)
Type: CAZyme
Location: 91206 - 93569 (-)
Gene ID: MGYG000003377_73_88
Type: TC
Location: 93585 - 94889 (-)
Type: TC
Location: 93585 - 94889 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Phytobacter
Species
Phytobacter sp002377245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003377_73_81 | vegetarian > omnivore | 4.74067 | 0.01604 |
| MGYG000003377_73_81 | vegetarian > vegan | 2.64053 | 0.01778 |
| MGYG000003377_73_87 | vegetarian > omnivore | 1.51718 | 0.02288 |
| MGYG000003377_73_88 | vegetarian > omnivore | 1.56096 | 0.02151 |