Cluster: MGYG000003373_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003373
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003373_8 | MGYG000003373_8_107 | 134320 | 136221 | - | GH2 |
| TC | MGYG000003373_8 | MGYG000003373_8_108 | 136405 | 136905 | - | 9.B.115.1.6 |
| STP | MGYG000003373_8 | MGYG000003373_8_109 | 136975 | 137727 | - | Fer4 |
| pfam | MGYG000003373_8 | MGYG000003373_8_110 | 137944 | 138633 | + | SIMPL |
| TC | MGYG000003373_8 | MGYG000003373_8_111 | 138787 | 139995 | - | 3.A.1.122.12 |
| TC | MGYG000003373_8 | MGYG000003373_8_112 | 139992 | 140849 | - | 3.A.1.122.2 |
| pfam | MGYG000003373_8 | MGYG000003373_8_113 | 140859 | 142433 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | MGYG000003373_8 | MGYG000003373_8_114 | 142636 | 144123 | - | 3.A.1.121.3 |
| STP | MGYG000003373_8 | MGYG000003373_8_115 | 144469 | 146298 | - | SIS | SIS |
| TC | MGYG000003373_8 | MGYG000003373_8_116 | 146549 | 147151 | + | 3.A.1.31.2 |
| TC | MGYG000003373_8 | MGYG000003373_8_117 | 147151 | 147885 | + | 3.A.1.31.2 |
| TC | MGYG000003373_8 | MGYG000003373_8_118 | 147893 | 149398 | + | 3.A.1.31.2 |
| TF | MGYG000003373_8 | MGYG000003373_8_119 | 149385 | 150359 | + | HTH_AraC |
| TC | MGYG000003373_8 | MGYG000003373_8_120 | 150463 | 152223 | + | 3.A.1.21.1 |
| TC | MGYG000003373_8 | MGYG000003373_8_121 | 152228 | 153979 | + | 3.A.1.21.1 |
Gene ID: MGYG000003373_8_107
Type: CAZyme
Location: 134320 - 136221 (-)
Type: CAZyme
Location: 134320 - 136221 (-)
Gene ID: MGYG000003373_8_108
Type: TC
Location: 136405 - 136905 (-)
Type: TC
Location: 136405 - 136905 (-)
Gene ID: MGYG000003373_8_109
Type: STP
Location: 136975 - 137727 (-)
Type: STP
Location: 136975 - 137727 (-)
Gene ID: MGYG000003373_8_110
Type: pfam
Location: 137944 - 138633 (+)
Type: pfam
Location: 137944 - 138633 (+)
Gene ID: MGYG000003373_8_111
Type: TC
Location: 138787 - 139995 (-)
Type: TC
Location: 138787 - 139995 (-)
Gene ID: MGYG000003373_8_112
Type: TC
Location: 139992 - 140849 (-)
Type: TC
Location: 139992 - 140849 (-)
Gene ID: MGYG000003373_8_113
Type: pfam
Location: 140859 - 142433 (-)
Type: pfam
Location: 140859 - 142433 (-)
Gene ID: MGYG000003373_8_114
Type: TC
Location: 142636 - 144123 (-)
Type: TC
Location: 142636 - 144123 (-)
Gene ID: MGYG000003373_8_115
Type: STP
Location: 144469 - 146298 (-)
Type: STP
Location: 144469 - 146298 (-)
Gene ID: MGYG000003373_8_116
Type: TC
Location: 146549 - 147151 (+)
Type: TC
Location: 146549 - 147151 (+)
Gene ID: MGYG000003373_8_117
Type: TC
Location: 147151 - 147885 (+)
Type: TC
Location: 147151 - 147885 (+)
Gene ID: MGYG000003373_8_118
Type: TC
Location: 147893 - 149398 (+)
Type: TC
Location: 147893 - 149398 (+)
Gene ID: MGYG000003373_8_119
Type: TF
Location: 149385 - 150359 (+)
Type: TF
Location: 149385 - 150359 (+)
Gene ID: MGYG000003373_8_120
Type: TC
Location: 150463 - 152223 (+)
Type: TC
Location: 150463 - 152223 (+)
Gene ID: MGYG000003373_8_121
Type: TC
Location: 152228 - 153979 (+)
Type: TC
Location: 152228 - 153979 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Lancefieldella
Species
Lancefieldella sp000564995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.