Cluster: MGYG000003365.1_CGC38
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003365.1
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003365.1_43 | MGYG000003365.1_43_92 | 104407 | 106086 | - | CBM91 | GH43_11 |
| TC | MGYG000003365.1_43 | MGYG000003365.1_43_93 | 106142 | 107596 | - | 2.A.2.3.2 |
| TF | MGYG000003365.1_43 | MGYG000003365.1_43_94 | 107831 | 108673 | + | HTH_AraC |
| TC | MGYG000003365.1_43 | MGYG000003365.1_43_95 | 108712 | 109314 | + | 2.A.76.1.4 |
| NULL(UNKNOWN) | MGYG000003365.1_43 | MGYG000003365.1_43_96 | 109317 | 109919 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003365.1_43 | MGYG000003365.1_43_97 | 109940 | 111628 | - | 5.A.1.1.1 |
| pfam | MGYG000003365.1_43 | MGYG000003365.1_43_98 | 111604 | 111927 | - | CutA1 |
| TC | MGYG000003365.1_43 | MGYG000003365.1_43_99 | 112052 | 113353 | - | 2.A.13.1.1 |
| pfam | MGYG000003365.1_43 | MGYG000003365.1_43_100 | 113472 | 114908 | - | Lyase_1 | FumaraseC_C |
| pfam | MGYG000003365.1_43 | MGYG000003365.1_43_101 | 115212 | 115682 | + | FxsA |
| TC | MGYG000003365.1_43 | MGYG000003365.1_43_102 | 115733 | 116974 | - | 2.A.3.13.1 |
Gene ID: MGYG000003365.1_43_92
Type: CAZyme
Location: 104407 - 106086 (-)
Type: CAZyme
Location: 104407 - 106086 (-)
Gene ID: MGYG000003365.1_43_93
Type: TC
Location: 106142 - 107596 (-)
Type: TC
Location: 106142 - 107596 (-)
Gene ID: MGYG000003365.1_43_94
Type: TF
Location: 107831 - 108673 (+)
Type: TF
Location: 107831 - 108673 (+)
Gene ID: MGYG000003365.1_43_95
Type: TC
Location: 108712 - 109314 (+)
Type: TC
Location: 108712 - 109314 (+)
Gene ID: MGYG000003365.1_43_96
Type:
Location: 109317 - 109919 (-)
Type:
Location: 109317 - 109919 (-)
Gene ID: MGYG000003365.1_43_97
Type: TC
Location: 109940 - 111628 (-)
Type: TC
Location: 109940 - 111628 (-)
Gene ID: MGYG000003365.1_43_98
Type: pfam
Location: 111604 - 111927 (-)
Type: pfam
Location: 111604 - 111927 (-)
Gene ID: MGYG000003365.1_43_99
Type: TC
Location: 112052 - 113353 (-)
Type: TC
Location: 112052 - 113353 (-)
Gene ID: MGYG000003365.1_43_100
Type: pfam
Location: 113472 - 114908 (-)
Type: pfam
Location: 113472 - 114908 (-)
Gene ID: MGYG000003365.1_43_101
Type: pfam
Location: 115212 - 115682 (+)
Type: pfam
Location: 115212 - 115682 (+)
Gene ID: MGYG000003365.1_43_102
Type: TC
Location: 115733 - 116974 (-)
Type: TC
Location: 115733 - 116974 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia sp002298805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003365.1_43_96 | vegetarian > omnivore | 5.20705 | 0.02745 |
| MGYG000003365.1_43_96 | vegetarian > vegan | 2.07821 | 0.03764 |
| MGYG000003365.1_43_99 | vegetarian > omnivore | 2.01592 | 0.03289 |
| MGYG000003365.1_43_100 | vegetarian > vegan | 1.01352 | 0.03764 |