Cluster: MGYG000003365.1_CGC36
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003365.1
- CGC Family ID: CGCFAM_00434
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_50 | 57878 | 58768 | + | 3.A.1.1.11 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_51 | 58761 | 59663 | + | 3.A.1.1.11 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_52 | 59676 | 60803 | + | 3.A.1.1.11 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_53 | 60817 | 62106 | + | 3.A.1.1.11 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_54 | 62149 | 63507 | - | 2.A.1.1.2 |
| pfam | MGYG000003365.1_42 | MGYG000003365.1_42_55 | 63910 | 64671 | - | adh_short | adh_short_C2 |
| pfam | MGYG000003365.1_42 | MGYG000003365.1_42_56 | 64733 | 65569 | - | KduI |
| CAZyme | MGYG000003365.1_42 | MGYG000003365.1_42_57 | 65939 | 67114 | + | PL22 | PL22 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_58 | 67267 | 67947 | - | 1.B.35.1.5 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_59 | 68322 | 69134 | - | 3.A.1.24.2 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_60 | 69163 | 69831 | - | 3.A.1.24.2 |
| TC | MGYG000003365.1_42 | MGYG000003365.1_42_61 | 69824 | 70846 | - | 3.A.1.24.2 |
Gene ID: MGYG000003365.1_42_50
Type: TC
Location: 57878 - 58768 (+)
Type: TC
Location: 57878 - 58768 (+)
Gene ID: MGYG000003365.1_42_51
Type: TC
Location: 58761 - 59663 (+)
Type: TC
Location: 58761 - 59663 (+)
Gene ID: MGYG000003365.1_42_52
Type: TC
Location: 59676 - 60803 (+)
Type: TC
Location: 59676 - 60803 (+)
Gene ID: MGYG000003365.1_42_53
Type: TC
Location: 60817 - 62106 (+)
Type: TC
Location: 60817 - 62106 (+)
Gene ID: MGYG000003365.1_42_54
Type: TC
Location: 62149 - 63507 (-)
Type: TC
Location: 62149 - 63507 (-)
Gene ID: MGYG000003365.1_42_55
Type: pfam
Location: 63910 - 64671 (-)
Type: pfam
Location: 63910 - 64671 (-)
Gene ID: MGYG000003365.1_42_56
Type: pfam
Location: 64733 - 65569 (-)
Type: pfam
Location: 64733 - 65569 (-)
Gene ID: MGYG000003365.1_42_57
Type: CAZyme
Location: 65939 - 67114 (+)
Type: CAZyme
Location: 65939 - 67114 (+)
Gene ID: MGYG000003365.1_42_58
Type: TC
Location: 67267 - 67947 (-)
Type: TC
Location: 67267 - 67947 (-)
Gene ID: MGYG000003365.1_42_59
Type: TC
Location: 68322 - 69134 (-)
Type: TC
Location: 68322 - 69134 (-)
Gene ID: MGYG000003365.1_42_60
Type: TC
Location: 69163 - 69831 (-)
Type: TC
Location: 69163 - 69831 (-)
Gene ID: MGYG000003365.1_42_61
Type: TC
Location: 69824 - 70846 (-)
Type: TC
Location: 69824 - 70846 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia sp002298805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003365.1_42_50 | vegetarian > vegan | 1.05147 | 0.03764 |
| MGYG000003365.1_42_53 | vegetarian > omnivore | 1.53873 | 0.03289 |
| MGYG000003365.1_42_53 | vegetarian > vegan | 1.22212 | 0.03764 |
| MGYG000003365.1_42_59 | vegetarian > vegan | 1.39603 | 0.03764 |