Cluster: MGYG000003365.1_CGC27
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003365.1
- CGC Family ID: CGCFAM_01018
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_94 | 103175 | 104203 | - | 2.A.52.1.1 |
| pfam | MGYG000003365.1_36 | MGYG000003365.1_36_95 | 104219 | 106441 | - | Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_96 | 106446 | 108593 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_97 | 108631 | 109176 | - | 5.A.3.5.1 |
| TF | MGYG000003365.1_36 | MGYG000003365.1_36_98 | 109310 | 110323 | - | LacI |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_99 | 110547 | 111995 | + | 4.A.1.2.3 |
| CAZyme | MGYG000003365.1_36 | MGYG000003365.1_36_100 | 112014 | 113438 | + | GH1 |
| peptidase | MGYG000003365.1_36 | MGYG000003365.1_36_101 | 113517 | 113972 | - | A31.003 |
| pfam | MGYG000003365.1_36 | MGYG000003365.1_36_102 | 113965 | 114375 | - | HycH |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_103 | 114372 | 115139 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_104 | 115139 | 115681 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_105 | 115691 | 117418 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_106 | 117418 | 118341 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_107 | 118344 | 120170 | - | 3.D.1.9.2 |
| TC | MGYG000003365.1_36 | MGYG000003365.1_36_108 | 120167 | 120772 | - | 3.D.1.9.2 |
Gene ID: MGYG000003365.1_36_94
Type: TC
Location: 103175 - 104203 (-)
Type: TC
Location: 103175 - 104203 (-)
Gene ID: MGYG000003365.1_36_95
Type: pfam
Location: 104219 - 106441 (-)
Type: pfam
Location: 104219 - 106441 (-)
Gene ID: MGYG000003365.1_36_96
Type: TC
Location: 106446 - 108593 (-)
Type: TC
Location: 106446 - 108593 (-)
Gene ID: MGYG000003365.1_36_97
Type: TC
Location: 108631 - 109176 (-)
Type: TC
Location: 108631 - 109176 (-)
Gene ID: MGYG000003365.1_36_98
Type: TF
Location: 109310 - 110323 (-)
Type: TF
Location: 109310 - 110323 (-)
Gene ID: MGYG000003365.1_36_99
Type: TC
Location: 110547 - 111995 (+)
Type: TC
Location: 110547 - 111995 (+)
Gene ID: MGYG000003365.1_36_100
Type: CAZyme
Location: 112014 - 113438 (+)
Type: CAZyme
Location: 112014 - 113438 (+)
Gene ID: MGYG000003365.1_36_101
Type: peptidase
Location: 113517 - 113972 (-)
Type: peptidase
Location: 113517 - 113972 (-)
Gene ID: MGYG000003365.1_36_102
Type: pfam
Location: 113965 - 114375 (-)
Type: pfam
Location: 113965 - 114375 (-)
Gene ID: MGYG000003365.1_36_103
Type: TC
Location: 114372 - 115139 (-)
Type: TC
Location: 114372 - 115139 (-)
Gene ID: MGYG000003365.1_36_104
Type: TC
Location: 115139 - 115681 (-)
Type: TC
Location: 115139 - 115681 (-)
Gene ID: MGYG000003365.1_36_105
Type: TC
Location: 115691 - 117418 (-)
Type: TC
Location: 115691 - 117418 (-)
Gene ID: MGYG000003365.1_36_106
Type: TC
Location: 117418 - 118341 (-)
Type: TC
Location: 117418 - 118341 (-)
Gene ID: MGYG000003365.1_36_107
Type: TC
Location: 118344 - 120170 (-)
Type: TC
Location: 118344 - 120170 (-)
Gene ID: MGYG000003365.1_36_108
Type: TC
Location: 120167 - 120772 (-)
Type: TC
Location: 120167 - 120772 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia sp002298805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.