Cluster: MGYG000003365.1_CGC21
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003365.1
- CGC Family ID: CGCFAM_00796
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003365.1_31 | MGYG000003365.1_31_67 | 70083 | 71399 | + | 2.A.1.7.5 |
| pfam | MGYG000003365.1_31 | MGYG000003365.1_31_68 | 71411 | 72427 | + | DUF4432 |
| pfam | MGYG000003365.1_31 | MGYG000003365.1_31_69 | 72493 | 72945 | + | DUF1198 |
| TC | MGYG000003365.1_31 | MGYG000003365.1_31_70 | 73095 | 74279 | + | 2.A.1.2.26 |
| pfam | MGYG000003365.1_31 | MGYG000003365.1_31_71 | 74332 | 75711 | - | LamB |
| TC | MGYG000003365.1_31 | MGYG000003365.1_31_72 | 75857 | 76159 | - | 4.A.3.2.6 |
| CAZyme | MGYG000003365.1_31 | MGYG000003365.1_31_73 | 76161 | 77552 | - | GH1 |
| TC | MGYG000003365.1_31 | MGYG000003365.1_31_74 | 77572 | 78897 | - | 4.A.3.2.6 |
| TC | MGYG000003365.1_31 | MGYG000003365.1_31_75 | 78910 | 79227 | - | 4.A.3.2.6 |
Gene ID: MGYG000003365.1_31_67
Type: TC
Location: 70083 - 71399 (+)
Type: TC
Location: 70083 - 71399 (+)
Gene ID: MGYG000003365.1_31_68
Type: pfam
Location: 71411 - 72427 (+)
Type: pfam
Location: 71411 - 72427 (+)
Gene ID: MGYG000003365.1_31_69
Type: pfam
Location: 72493 - 72945 (+)
Type: pfam
Location: 72493 - 72945 (+)
Gene ID: MGYG000003365.1_31_70
Type: TC
Location: 73095 - 74279 (+)
Type: TC
Location: 73095 - 74279 (+)
Gene ID: MGYG000003365.1_31_71
Type: pfam
Location: 74332 - 75711 (-)
Type: pfam
Location: 74332 - 75711 (-)
Gene ID: MGYG000003365.1_31_72
Type: TC
Location: 75857 - 76159 (-)
Type: TC
Location: 75857 - 76159 (-)
Gene ID: MGYG000003365.1_31_73
Type: CAZyme
Location: 76161 - 77552 (-)
Type: CAZyme
Location: 76161 - 77552 (-)
Gene ID: MGYG000003365.1_31_74
Type: TC
Location: 77572 - 78897 (-)
Type: TC
Location: 77572 - 78897 (-)
Gene ID: MGYG000003365.1_31_75
Type: TC
Location: 78910 - 79227 (-)
Type: TC
Location: 78910 - 79227 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia sp002298805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003365.1_31_71 | vegetarian > vegan | 1.39129 | 0.03764 |
| MGYG000003365.1_31_73 | vegetarian > vegan | 1.35132 | 0.03764 |
| MGYG000003365.1_31_74 | vegetarian > vegan | 1.03223 | 0.03764 |
| MGYG000003365.1_31_75 | vegetarian > vegan | 2.10592 | 0.03510 |