Cluster: MGYG000003365.1_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003365.1
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_28 | 30967 | 31602 | - | 5.A.3.2.1 |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_29 | 31599 | 32504 | - | 5.A.3.2.1 |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_30 | 32517 | 34931 | - | 5.A.3.2.1 |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_31 | 34980 | 35567 | - | 5.A.3.2.1 |
| pfam | MGYG000003365.1_27 | MGYG000003365.1_27_32 | 35758 | 36582 | + | FdhD-NarQ |
| pfam | MGYG000003365.1_27 | MGYG000003365.1_27_33 | 36711 | 36923 | + | YdgH_BhsA-like |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_34 | 36962 | 37285 | - | 2.A.78.2.3 |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_35 | 37285 | 37944 | - | 2.A.78.2.3 |
| TF | MGYG000003365.1_27 | MGYG000003365.1_27_36 | 38060 | 38608 | + | HTH_3 |
| TF | MGYG000003365.1_27 | MGYG000003365.1_27_37 | 38629 | 39624 | + | LacI |
| CAZyme | MGYG000003365.1_27 | MGYG000003365.1_27_38 | 39729 | 41852 | + | GH36 |
| TC | MGYG000003365.1_27 | MGYG000003365.1_27_39 | 41896 | 43170 | + | 2.A.1.5.4 |
Gene ID: MGYG000003365.1_27_28
Type: TC
Location: 30967 - 31602 (-)
Type: TC
Location: 30967 - 31602 (-)
Gene ID: MGYG000003365.1_27_29
Type: TC
Location: 31599 - 32504 (-)
Type: TC
Location: 31599 - 32504 (-)
Gene ID: MGYG000003365.1_27_30
Type: TC
Location: 32517 - 34931 (-)
Type: TC
Location: 32517 - 34931 (-)
Gene ID: MGYG000003365.1_27_31
Type: TC
Location: 34980 - 35567 (-)
Type: TC
Location: 34980 - 35567 (-)
Gene ID: MGYG000003365.1_27_32
Type: pfam
Location: 35758 - 36582 (+)
Type: pfam
Location: 35758 - 36582 (+)
Gene ID: MGYG000003365.1_27_33
Type: pfam
Location: 36711 - 36923 (+)
Type: pfam
Location: 36711 - 36923 (+)
Gene ID: MGYG000003365.1_27_34
Type: TC
Location: 36962 - 37285 (-)
Type: TC
Location: 36962 - 37285 (-)
Gene ID: MGYG000003365.1_27_35
Type: TC
Location: 37285 - 37944 (-)
Type: TC
Location: 37285 - 37944 (-)
Gene ID: MGYG000003365.1_27_36
Type: TF
Location: 38060 - 38608 (+)
Type: TF
Location: 38060 - 38608 (+)
Gene ID: MGYG000003365.1_27_37
Type: TF
Location: 38629 - 39624 (+)
Type: TF
Location: 38629 - 39624 (+)
Gene ID: MGYG000003365.1_27_38
Type: CAZyme
Location: 39729 - 41852 (+)
Type: CAZyme
Location: 39729 - 41852 (+)
Gene ID: MGYG000003365.1_27_39
Type: TC
Location: 41896 - 43170 (+)
Type: TC
Location: 41896 - 43170 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pseudescherichia
Species
Pseudescherichia sp002298805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003365.1_27_37 | vegetarian > vegan | 1.21512 | 0.03764 |
| MGYG000003365.1_27_38 | vegetarian > vegan | 1.00856 | 0.03764 |
| MGYG000003365.1_27_39 | vegetarian > omnivore | 2.33750 | 0.04648 |
| MGYG000003365.1_27_39 | vegetarian > vegan | 1.38156 | 0.03764 |