Cluster: MGYG000003360_CGC58
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003360
- CGC Family ID: CGCFAM_00796
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003360_48 | MGYG000003360_48_72 | 75588 | 76982 | - | 1.C.75.1.2 |
| TF | MGYG000003360_48 | MGYG000003360_48_73 | 77486 | 78439 | - | LacI |
| TC | MGYG000003360_48 | MGYG000003360_48_74 | 78735 | 79049 | + | 4.A.3.2.6 |
| TC | MGYG000003360_48 | MGYG000003360_48_75 | 79062 | 80387 | + | 4.A.3.2.6 |
| CAZyme | MGYG000003360_48 | MGYG000003360_48_76 | 80408 | 81805 | + | GH1 |
| TC | MGYG000003360_48 | MGYG000003360_48_77 | 81802 | 82104 | + | 4.A.3.2.6 |
| pfam | MGYG000003360_48 | MGYG000003360_48_78 | 82255 | 83634 | + | LamB |
| TC | MGYG000003360_48 | MGYG000003360_48_79 | 83728 | 84903 | - | 2.A.1.2.26 |
| pfam | MGYG000003360_48 | MGYG000003360_48_80 | 85043 | 85495 | - | DUF1198 |
| NULL(UNKNOWN) | MGYG000003360_48 | MGYG000003360_48_81 | 85561 | 86577 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003360_48 | MGYG000003360_48_82 | 86549 | 87880 | - | 2.A.1.7.5 |
Gene ID: MGYG000003360_48_72
Type: TC
Location: 75588 - 76982 (-)
Type: TC
Location: 75588 - 76982 (-)
Gene ID: MGYG000003360_48_73
Type: TF
Location: 77486 - 78439 (-)
Type: TF
Location: 77486 - 78439 (-)
Gene ID: MGYG000003360_48_74
Type: TC
Location: 78735 - 79049 (+)
Type: TC
Location: 78735 - 79049 (+)
Gene ID: MGYG000003360_48_75
Type: TC
Location: 79062 - 80387 (+)
Type: TC
Location: 79062 - 80387 (+)
Gene ID: MGYG000003360_48_76
Type: CAZyme
Location: 80408 - 81805 (+)
Type: CAZyme
Location: 80408 - 81805 (+)
Gene ID: MGYG000003360_48_77
Type: TC
Location: 81802 - 82104 (+)
Type: TC
Location: 81802 - 82104 (+)
Gene ID: MGYG000003360_48_78
Type: pfam
Location: 82255 - 83634 (+)
Type: pfam
Location: 82255 - 83634 (+)
Gene ID: MGYG000003360_48_79
Type: TC
Location: 83728 - 84903 (-)
Type: TC
Location: 83728 - 84903 (-)
Gene ID: MGYG000003360_48_80
Type: pfam
Location: 85043 - 85495 (-)
Type: pfam
Location: 85043 - 85495 (-)
Gene ID: MGYG000003360_48_81
Type:
Location: 85561 - 86577 (-)
Type:
Location: 85561 - 86577 (-)
Gene ID: MGYG000003360_48_82
Type: TC
Location: 86549 - 87880 (-)
Type: TC
Location: 86549 - 87880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter_D
Species
Enterobacter_D kobei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003360_48_74 | vegetarian > omnivore | 2.07163 | 0.03432 |
| MGYG000003360_48_74 | vegetarian > vegan | 1.59903 | 0.03018 |
| MGYG000003360_48_75 | vegetarian > omnivore | 1.67268 | 0.03491 |
| MGYG000003360_48_75 | vegetarian > vegan | 1.30234 | 0.03018 |
| MGYG000003360_48_76 | vegetarian > vegan | 1.45859 | 0.03018 |
| MGYG000003360_48_78 | vegetarian > vegan | 1.69458 | 0.02451 |