Cluster: MGYG000003358_CGC25
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003358
- CGC Family ID: CGCFAM_00434
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003358_76 | MGYG000003358_76_56 | 60588 | 61478 | + | 3.A.1.1.11 |
| TC | MGYG000003358_76 | MGYG000003358_76_57 | 61471 | 62373 | + | 3.A.1.1.11 |
| TC | MGYG000003358_76 | MGYG000003358_76_58 | 62386 | 63513 | + | 3.A.1.1.11 |
| TC | MGYG000003358_76 | MGYG000003358_76_59 | 63528 | 64814 | + | 3.A.1.1.11 |
| CAZyme | MGYG000003358_76 | MGYG000003358_76_60 | 64884 | 66011 | + | PL22 | PL22_1 |
| TC | MGYG000003358_76 | MGYG000003358_76_61 | 66097 | 67515 | - | 2.A.1.1.2 |
| pfam | MGYG000003358_76 | MGYG000003358_76_62 | 67850 | 68611 | - | adh_short | KR | adh_short_C2 |
| pfam | MGYG000003358_76 | MGYG000003358_76_63 | 68676 | 69512 | - | KduI |
| CAZyme | MGYG000003358_76 | MGYG000003358_76_64 | 69986 | 71161 | + | PL22 | PL22 |
| TC | MGYG000003358_76 | MGYG000003358_76_65 | 71486 | 72190 | - | 1.B.35.1.5 |
| pfam | MGYG000003358_76 | MGYG000003358_76_66 | 72657 | 73841 | - | Thiolase_N | ketoacyl-synt | Thiolase_C |
| TF | MGYG000003358_76 | MGYG000003358_76_67 | 73953 | 74822 | - | HTH_1 |
| TC | MGYG000003358_76 | MGYG000003358_76_68 | 74917 | 75378 | + | 2.A.117.1.3 |
| TC | MGYG000003358_76 | MGYG000003358_76_69 | 75490 | 76719 | + | 2.A.42.2.5 |
| pfam | MGYG000003358_76 | MGYG000003358_76_70 | 76863 | 78518 | - | DAO | Mqo |
| TC | MGYG000003358_76 | MGYG000003358_76_71 | 78711 | 79481 | - | 3.A.1.16.4 |
| pfam | MGYG000003358_76 | MGYG000003358_76_72 | 79481 | 80452 | - | OpuAC | NMT1 | NMT1_2 |
| TC | MGYG000003358_76 | MGYG000003358_76_73 | 80504 | 81334 | - | 3.A.1.17.1 |
| sulfatase | MGYG000003358_76 | MGYG000003358_76_74 | 81344 | 82690 | - | S2 |
| TC | MGYG000003358_76 | MGYG000003358_76_75 | 82811 | 84127 | - | 2.A.49.9.2 |
Gene ID: MGYG000003358_76_56
Type: TC
Location: 60588 - 61478 (+)
Type: TC
Location: 60588 - 61478 (+)
Gene ID: MGYG000003358_76_57
Type: TC
Location: 61471 - 62373 (+)
Type: TC
Location: 61471 - 62373 (+)
Gene ID: MGYG000003358_76_58
Type: TC
Location: 62386 - 63513 (+)
Type: TC
Location: 62386 - 63513 (+)
Gene ID: MGYG000003358_76_59
Type: TC
Location: 63528 - 64814 (+)
Type: TC
Location: 63528 - 64814 (+)
Gene ID: MGYG000003358_76_60
Type: CAZyme
Location: 64884 - 66011 (+)
Type: CAZyme
Location: 64884 - 66011 (+)
Gene ID: MGYG000003358_76_61
Type: TC
Location: 66097 - 67515 (-)
Type: TC
Location: 66097 - 67515 (-)
Gene ID: MGYG000003358_76_62
Type: pfam
Location: 67850 - 68611 (-)
Type: pfam
Location: 67850 - 68611 (-)
Gene ID: MGYG000003358_76_63
Type: pfam
Location: 68676 - 69512 (-)
Type: pfam
Location: 68676 - 69512 (-)
Gene ID: MGYG000003358_76_64
Type: CAZyme
Location: 69986 - 71161 (+)
Type: CAZyme
Location: 69986 - 71161 (+)
Gene ID: MGYG000003358_76_65
Type: TC
Location: 71486 - 72190 (-)
Type: TC
Location: 71486 - 72190 (-)
Gene ID: MGYG000003358_76_66
Type: pfam
Location: 72657 - 73841 (-)
Type: pfam
Location: 72657 - 73841 (-)
Gene ID: MGYG000003358_76_67
Type: TF
Location: 73953 - 74822 (-)
Type: TF
Location: 73953 - 74822 (-)
Gene ID: MGYG000003358_76_68
Type: TC
Location: 74917 - 75378 (+)
Type: TC
Location: 74917 - 75378 (+)
Gene ID: MGYG000003358_76_69
Type: TC
Location: 75490 - 76719 (+)
Type: TC
Location: 75490 - 76719 (+)
Gene ID: MGYG000003358_76_70
Type: pfam
Location: 76863 - 78518 (-)
Type: pfam
Location: 76863 - 78518 (-)
Gene ID: MGYG000003358_76_71
Type: TC
Location: 78711 - 79481 (-)
Type: TC
Location: 78711 - 79481 (-)
Gene ID: MGYG000003358_76_72
Type: pfam
Location: 79481 - 80452 (-)
Type: pfam
Location: 79481 - 80452 (-)
Gene ID: MGYG000003358_76_73
Type: TC
Location: 80504 - 81334 (-)
Type: TC
Location: 80504 - 81334 (-)
Gene ID: MGYG000003358_76_74
Type: sulfatase
Location: 81344 - 82690 (-)
Type: sulfatase
Location: 81344 - 82690 (-)
Gene ID: MGYG000003358_76_75
Type: TC
Location: 82811 - 84127 (-)
Type: TC
Location: 82811 - 84127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera ascorbata
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003358_76_57 | vegetarian > omnivore | 1.23544 | 0.04337 |
| MGYG000003358_76_57 | vegetarian > vegan | 1.07073 | 0.04653 |
| MGYG000003358_76_58 | vegetarian > omnivore | 1.21249 | 0.02118 |
| MGYG000003358_76_59 | vegetarian > omnivore | 1.78634 | 0.03466 |
| MGYG000003358_76_63 | vegetarian > omnivore | 1.52370 | 0.01721 |