Cluster: MGYG000003339_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003339
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003339_17 | MGYG000003339_17_24 | 21889 | 23583 | + | 4.A.3.1.1 |
| STP | MGYG000003339_17 | MGYG000003339_17_25 | 23746 | 24141 | + | DeoRC |
| TF | MGYG000003339_17 | MGYG000003339_17_26 | 24142 | 25398 | - | 0043095 |
| CAZyme | MGYG000003339_17 | MGYG000003339_17_27 | 26133 | 27554 | - | GH1 |
| TC | MGYG000003339_17 | MGYG000003339_17_28 | 27630 | 28118 | - | 4.A.3.1.1 |
Gene ID: MGYG000003339_17_24
Type: TC
Location: 21889 - 23583 (+)
Type: TC
Location: 21889 - 23583 (+)
Gene ID: MGYG000003339_17_25
Type: STP
Location: 23746 - 24141 (+)
Type: STP
Location: 23746 - 24141 (+)
Gene ID: MGYG000003339_17_26
Type: TF
Location: 24142 - 25398 (-)
Type: TF
Location: 24142 - 25398 (-)
Gene ID: MGYG000003339_17_27
Type: CAZyme
Location: 26133 - 27554 (-)
Type: CAZyme
Location: 26133 - 27554 (-)
Gene ID: MGYG000003339_17_28
Type: TC
Location: 27630 - 28118 (-)
Type: TC
Location: 27630 - 28118 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900765115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.