Cluster: MGYG000003334_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000003334
- CGC Family ID: CGCFAM_01025
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003334_2 | MGYG000003334_2_15 | 15533 | 16180 | - | GH73 |
| pfam | MGYG000003334_2 | MGYG000003334_2_16 | 16418 | 16888 | - | SprT-like | Zn_ribbon_SprT |
| CAZyme | MGYG000003334_2 | MGYG000003334_2_17 | 16876 | 17574 | - | GT32 |
| TC | MGYG000003334_2 | MGYG000003334_2_18 | 17577 | 19007 | - | 2.A.66.2.16 |
| pfam | MGYG000003334_2 | MGYG000003334_2_19 | 19012 | 20166 | - | Glyphos_transf |
| TC | MGYG000003334_2 | MGYG000003334_2_20 | 20253 | 22922 | - | 3.A.3.2.28 |
| pfam | MGYG000003334_2 | MGYG000003334_2_21 | 23112 | 23942 | - | NAD_synthase |
| pfam | MGYG000003334_2 | MGYG000003334_2_22 | 23939 | 25417 | - | NAPRTase | NAPRTase_N | NAPRTase_C |
| CAZyme | MGYG000003334_2 | MGYG000003334_2_23 | 25502 | 26605 | - | GT4 |
| CAZyme | MGYG000003334_2 | MGYG000003334_2_24 | 26610 | 27338 | - | GT26 |
| pfam | MGYG000003334_2 | MGYG000003334_2_25 | 27468 | 27854 | + | CTP_transf_like |
| pfam | MGYG000003334_2 | MGYG000003334_2_26 | 27910 | 28311 | - | LMWPc |
| TC | MGYG000003334_2 | MGYG000003334_2_27 | 28311 | 29285 | - | 2.A.59.1.2 |
Gene ID: MGYG000003334_2_15
Type: CAZyme
Location: 15533 - 16180 (-)
Type: CAZyme
Location: 15533 - 16180 (-)
Gene ID: MGYG000003334_2_16
Type: pfam
Location: 16418 - 16888 (-)
Type: pfam
Location: 16418 - 16888 (-)
Gene ID: MGYG000003334_2_17
Type: CAZyme
Location: 16876 - 17574 (-)
Type: CAZyme
Location: 16876 - 17574 (-)
Gene ID: MGYG000003334_2_18
Type: TC
Location: 17577 - 19007 (-)
Type: TC
Location: 17577 - 19007 (-)
Gene ID: MGYG000003334_2_19
Type: pfam
Location: 19012 - 20166 (-)
Type: pfam
Location: 19012 - 20166 (-)
Gene ID: MGYG000003334_2_20
Type: TC
Location: 20253 - 22922 (-)
Type: TC
Location: 20253 - 22922 (-)
Gene ID: MGYG000003334_2_21
Type: pfam
Location: 23112 - 23942 (-)
Type: pfam
Location: 23112 - 23942 (-)
Gene ID: MGYG000003334_2_22
Type: pfam
Location: 23939 - 25417 (-)
Type: pfam
Location: 23939 - 25417 (-)
Gene ID: MGYG000003334_2_23
Type: CAZyme
Location: 25502 - 26605 (-)
Type: CAZyme
Location: 25502 - 26605 (-)
Gene ID: MGYG000003334_2_24
Type: CAZyme
Location: 26610 - 27338 (-)
Type: CAZyme
Location: 26610 - 27338 (-)
Gene ID: MGYG000003334_2_25
Type: pfam
Location: 27468 - 27854 (+)
Type: pfam
Location: 27468 - 27854 (+)
Gene ID: MGYG000003334_2_26
Type: pfam
Location: 27910 - 28311 (-)
Type: pfam
Location: 27910 - 28311 (-)
Gene ID: MGYG000003334_2_27
Type: TC
Location: 28311 - 29285 (-)
Type: TC
Location: 28311 - 29285 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.