Cluster: MGYG000003334_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003334
- CGC Family ID: CGCFAM_00403
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003334_22 | MGYG000003334_22_15 | 14035 | 15417 | + | GH1 |
| TC | MGYG000003334_22 | MGYG000003334_22_16 | 15417 | 16832 | + | 4.A.3.2.8 |
| NULL(UNKNOWN) | MGYG000003334_22 | MGYG000003334_22_17 | 16851 | 17093 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000003334_22 | MGYG000003334_22_18 | 17216 | 17938 | + | GntR |
| CAZyme | MGYG000003334_22 | MGYG000003334_22_19 | 17948 | 19429 | + | GH1 |
| pfam | MGYG000003334_22 | MGYG000003334_22_20 | 19535 | 19945 | + | DUF3284 |
| TC | MGYG000003334_22 | MGYG000003334_22_21 | 20297 | 21649 | - | 4.A.3.2.8 |
| NULL(UNKNOWN) | MGYG000003334_22 | MGYG000003334_22_22 | 21849 | 22361 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003334_22 | MGYG000003334_22_23 | 22467 | 22829 | - | 4.A.3.2.2 |
| TC | MGYG000003334_22 | MGYG000003334_22_24 | 22857 | 23192 | - | 4.A.3.2.4 |
| TF | MGYG000003334_22 | MGYG000003334_22_25 | 23501 | 24205 | + | GntR |
| CAZyme | MGYG000003334_22 | MGYG000003334_22_26 | 24290 | 25735 | + | GH1 |
| TC | MGYG000003334_22 | MGYG000003334_22_27 | 25811 | 26731 | - | 8.A.5.1.7 |
Gene ID: MGYG000003334_22_15
Type: CAZyme
Location: 14035 - 15417 (+)
Type: CAZyme
Location: 14035 - 15417 (+)
Gene ID: MGYG000003334_22_16
Type: TC
Location: 15417 - 16832 (+)
Type: TC
Location: 15417 - 16832 (+)
Gene ID: MGYG000003334_22_17
Type:
Location: 16851 - 17093 (+)
Type:
Location: 16851 - 17093 (+)
Gene ID: MGYG000003334_22_18
Type: TF
Location: 17216 - 17938 (+)
Type: TF
Location: 17216 - 17938 (+)
Gene ID: MGYG000003334_22_19
Type: CAZyme
Location: 17948 - 19429 (+)
Type: CAZyme
Location: 17948 - 19429 (+)
Gene ID: MGYG000003334_22_20
Type: pfam
Location: 19535 - 19945 (+)
Type: pfam
Location: 19535 - 19945 (+)
Gene ID: MGYG000003334_22_21
Type: TC
Location: 20297 - 21649 (-)
Type: TC
Location: 20297 - 21649 (-)
Gene ID: MGYG000003334_22_22
Type:
Location: 21849 - 22361 (-)
Type:
Location: 21849 - 22361 (-)
Gene ID: MGYG000003334_22_23
Type: TC
Location: 22467 - 22829 (-)
Type: TC
Location: 22467 - 22829 (-)
Gene ID: MGYG000003334_22_24
Type: TC
Location: 22857 - 23192 (-)
Type: TC
Location: 22857 - 23192 (-)
Gene ID: MGYG000003334_22_25
Type: TF
Location: 23501 - 24205 (+)
Type: TF
Location: 23501 - 24205 (+)
Gene ID: MGYG000003334_22_26
Type: CAZyme
Location: 24290 - 25735 (+)
Type: CAZyme
Location: 24290 - 25735 (+)
Gene ID: MGYG000003334_22_27
Type: TC
Location: 25811 - 26731 (-)
Type: TC
Location: 25811 - 26731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.