Cluster: MGYG000003274_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003274
- Continent: South America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003274_32 | MGYG000003274_32_58 | 60818 | 62260 | + | 3.A.1.8.1 |
| TC | MGYG000003274_32 | MGYG000003274_32_59 | 62264 | 63334 | + | 3.A.1.1.3 |
| pfam | MGYG000003274_32 | MGYG000003274_32_60 | 63769 | 65052 | + | HGD-D |
| TC | MGYG000003274_32 | MGYG000003274_32_61 | 65237 | 66847 | + | 3.A.1.5.11 |
| TC | MGYG000003274_32 | MGYG000003274_32_62 | 66969 | 67889 | + | 3.A.1.5.39 |
| TC | MGYG000003274_32 | MGYG000003274_32_63 | 67889 | 68716 | + | 3.A.1.5.39 |
| TC | MGYG000003274_32 | MGYG000003274_32_64 | 68720 | 69715 | + | 3.A.1.5.37 |
| TC | MGYG000003274_32 | MGYG000003274_32_65 | 69705 | 70490 | + | 3.A.1.5.36 |
| pfam | MGYG000003274_32 | MGYG000003274_32_66 | 70567 | 71730 | + | HGD-D |
| pfam | MGYG000003274_32 | MGYG000003274_32_67 | 71786 | 72331 | + | C_GCAxxG_C_C |
| TC | MGYG000003274_32 | MGYG000003274_32_68 | 72400 | 73314 | + | 2.A.16.6.1 |
| pfam | MGYG000003274_32 | MGYG000003274_32_69 | 73363 | 74127 | + | BcrAD_BadFG |
| CAZyme | MGYG000003274_32 | MGYG000003274_32_70 | 74142 | 75359 | + | GT4 |
Gene ID: MGYG000003274_32_58
Type: TC
Location: 60818 - 62260 (+)
Type: TC
Location: 60818 - 62260 (+)
Gene ID: MGYG000003274_32_59
Type: TC
Location: 62264 - 63334 (+)
Type: TC
Location: 62264 - 63334 (+)
Gene ID: MGYG000003274_32_60
Type: pfam
Location: 63769 - 65052 (+)
Type: pfam
Location: 63769 - 65052 (+)
Gene ID: MGYG000003274_32_61
Type: TC
Location: 65237 - 66847 (+)
Type: TC
Location: 65237 - 66847 (+)
Gene ID: MGYG000003274_32_62
Type: TC
Location: 66969 - 67889 (+)
Type: TC
Location: 66969 - 67889 (+)
Gene ID: MGYG000003274_32_63
Type: TC
Location: 67889 - 68716 (+)
Type: TC
Location: 67889 - 68716 (+)
Gene ID: MGYG000003274_32_64
Type: TC
Location: 68720 - 69715 (+)
Type: TC
Location: 68720 - 69715 (+)
Gene ID: MGYG000003274_32_65
Type: TC
Location: 69705 - 70490 (+)
Type: TC
Location: 69705 - 70490 (+)
Gene ID: MGYG000003274_32_66
Type: pfam
Location: 70567 - 71730 (+)
Type: pfam
Location: 70567 - 71730 (+)
Gene ID: MGYG000003274_32_67
Type: pfam
Location: 71786 - 72331 (+)
Type: pfam
Location: 71786 - 72331 (+)
Gene ID: MGYG000003274_32_68
Type: TC
Location: 72400 - 73314 (+)
Type: TC
Location: 72400 - 73314 (+)
Gene ID: MGYG000003274_32_69
Type: pfam
Location: 73363 - 74127 (+)
Type: pfam
Location: 73363 - 74127 (+)
Gene ID: MGYG000003274_32_70
Type: CAZyme
Location: 74142 - 75359 (+)
Type: CAZyme
Location: 74142 - 75359 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003274_32_61 | vegan > omnivore | 3.65218 | 0.00861 |
| MGYG000003274_32_62 | vegan > omnivore | 3.12455 | 0.00861 |
| MGYG000003274_32_63 | vegan > omnivore | 3.44550 | 0.00861 |
| MGYG000003274_32_65 | vegan > omnivore | 3.20737 | 0.00861 |
| MGYG000003274_32_70 | vegan > omnivore | 1.86196 | 0.00861 |