Cluster: MGYG000003252_CGC80
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: MGYG000003252
- CGC Family ID: CGCFAM_00136
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003252_309 | MGYG000003252_309_18 | 26263 | 29826 | - | 1.B.14.6.1 |
| STP | MGYG000003252_309 | MGYG000003252_309_19 | 29920 | 31077 | - | FecR |
| TF | MGYG000003252_309 | MGYG000003252_309_20 | 31148 | 31699 | - | GerE |
| CAZyme | MGYG000003252_309 | MGYG000003252_309_21 | 32114 | 33610 | - | PL1_2 |
| CAZyme | MGYG000003252_309 | MGYG000003252_309_22 | 33646 | 35313 | - | PL1_2 |
| CAZyme | MGYG000003252_309 | MGYG000003252_309_23 | 35347 | 36921 | - | PL1_2 |
| CAZyme | MGYG000003252_309 | MGYG000003252_309_24 | 37015 | 38658 | - | CE8 |
| pfam | MGYG000003252_309 | MGYG000003252_309_25 | 38733 | 40619 | - | DUF5123 |
| pfam | MGYG000003252_309 | MGYG000003252_309_26 | 40638 | 42542 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000003252_309 | MGYG000003252_309_27 | 42568 | 45816 | - | 1.B.14.6.1 |
Gene ID: MGYG000003252_309_18
Type: TC
Location: 26263 - 29826 (-)
Type: TC
Location: 26263 - 29826 (-)
Gene ID: MGYG000003252_309_19
Type: STP
Location: 29920 - 31077 (-)
Type: STP
Location: 29920 - 31077 (-)
Gene ID: MGYG000003252_309_20
Type: TF
Location: 31148 - 31699 (-)
Type: TF
Location: 31148 - 31699 (-)
Gene ID: MGYG000003252_309_21
Type: CAZyme
Location: 32114 - 33610 (-)
Type: CAZyme
Location: 32114 - 33610 (-)
Gene ID: MGYG000003252_309_22
Type: CAZyme
Location: 33646 - 35313 (-)
Type: CAZyme
Location: 33646 - 35313 (-)
Gene ID: MGYG000003252_309_23
Type: CAZyme
Location: 35347 - 36921 (-)
Type: CAZyme
Location: 35347 - 36921 (-)
Gene ID: MGYG000003252_309_24
Type: CAZyme
Location: 37015 - 38658 (-)
Type: CAZyme
Location: 37015 - 38658 (-)
Gene ID: MGYG000003252_309_25
Type: pfam
Location: 38733 - 40619 (-)
Type: pfam
Location: 38733 - 40619 (-)
Gene ID: MGYG000003252_309_26
Type: pfam
Location: 40638 - 42542 (-)
Type: pfam
Location: 40638 - 42542 (-)
Gene ID: MGYG000003252_309_27
Type: TC
Location: 42568 - 45816 (-)
Type: TC
Location: 42568 - 45816 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900761785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003252_309_26 | vegan > omnivore | 1.09518 | 0.00574 |
| MGYG000003252_309_26 | vegetarian > omnivore | 1.36292 | 0.03811 |
| MGYG000003252_309_27 | vegetarian > omnivore | 2.17175 | 0.01161 |