Cluster: MGYG000003252_CGC76
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000003252
- CGC Family ID: CGCFAM_03105
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003252_303 | MGYG000003252_303_4 | 4705 | 5790 | - | GH18 |
| TC | MGYG000003252_303 | MGYG000003252_303_5 | 5818 | 7374 | - | 8.A.46.2.1 |
| TC | MGYG000003252_303 | MGYG000003252_303_6 | 7393 | 10728 | - | 1.B.14.6.13 |
| STP | MGYG000003252_303 | MGYG000003252_303_7 | 10890 | 11789 | - | FecR |
| STP | MGYG000003252_303 | MGYG000003252_303_8 | 11869 | 12465 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | MGYG000003252_303 | MGYG000003252_303_9 | 12654 | 13616 | + | GH18 |
| TF | MGYG000003252_303 | MGYG000003252_303_10 | 13833 | 17960 | - | HTH_AraC |
| NULL(UNKNOWN) | MGYG000003252_303 | MGYG000003252_303_11 | 18178 | 19686 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003252_303 | MGYG000003252_303_12 | 19707 | 22739 | + | 1.B.14.6.1 |
| TC | MGYG000003252_303 | MGYG000003252_303_13 | 22762 | 24366 | + | 8.A.46.1.5 |
| CAZyme | MGYG000003252_303 | MGYG000003252_303_14 | 24377 | 25966 | + | GH30_4 |
| CAZyme | MGYG000003252_303 | MGYG000003252_303_15 | 26143 | 27606 | + | GH30_4 |
| pfam | MGYG000003252_303 | MGYG000003252_303_16 | 27719 | 28699 | + | Fic | Virulence_RhuM |
| pfam | MGYG000003252_303 | MGYG000003252_303_17 | 28846 | 29499 | - | Bac_DNA_binding | HU-HIG |
| TC | MGYG000003252_303 | MGYG000003252_303_18 | 30054 | 31649 | - | 9.B.174.1.1 |
Gene ID: MGYG000003252_303_4
Type: CAZyme
Location: 4705 - 5790 (-)
Type: CAZyme
Location: 4705 - 5790 (-)
Gene ID: MGYG000003252_303_5
Type: TC
Location: 5818 - 7374 (-)
Type: TC
Location: 5818 - 7374 (-)
Gene ID: MGYG000003252_303_6
Type: TC
Location: 7393 - 10728 (-)
Type: TC
Location: 7393 - 10728 (-)
Gene ID: MGYG000003252_303_7
Type: STP
Location: 10890 - 11789 (-)
Type: STP
Location: 10890 - 11789 (-)
Gene ID: MGYG000003252_303_8
Type: STP
Location: 11869 - 12465 (-)
Type: STP
Location: 11869 - 12465 (-)
Gene ID: MGYG000003252_303_9
Type: CAZyme
Location: 12654 - 13616 (+)
Type: CAZyme
Location: 12654 - 13616 (+)
Gene ID: MGYG000003252_303_10
Type: TF
Location: 13833 - 17960 (-)
Type: TF
Location: 13833 - 17960 (-)
Gene ID: MGYG000003252_303_11
Type:
Location: 18178 - 19686 (+)
Type:
Location: 18178 - 19686 (+)
Gene ID: MGYG000003252_303_12
Type: TC
Location: 19707 - 22739 (+)
Type: TC
Location: 19707 - 22739 (+)
Gene ID: MGYG000003252_303_13
Type: TC
Location: 22762 - 24366 (+)
Type: TC
Location: 22762 - 24366 (+)
Gene ID: MGYG000003252_303_14
Type: CAZyme
Location: 24377 - 25966 (+)
Type: CAZyme
Location: 24377 - 25966 (+)
Gene ID: MGYG000003252_303_15
Type: CAZyme
Location: 26143 - 27606 (+)
Type: CAZyme
Location: 26143 - 27606 (+)
Gene ID: MGYG000003252_303_16
Type: pfam
Location: 27719 - 28699 (+)
Type: pfam
Location: 27719 - 28699 (+)
Gene ID: MGYG000003252_303_17
Type: pfam
Location: 28846 - 29499 (-)
Type: pfam
Location: 28846 - 29499 (-)
Gene ID: MGYG000003252_303_18
Type: TC
Location: 30054 - 31649 (-)
Type: TC
Location: 30054 - 31649 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900761785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.