Cluster: MGYG000003252_CGC104
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 10
- Substrate: arabinogalactan/pectin
- Genome ID: MGYG000003252
- CGC Family ID: CGCFAM_00212
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003252_424 | MGYG000003252_424_13 | 18257 | 21565 | + | 1.B.14.6.2 |
| pfam | MGYG000003252_424 | MGYG000003252_424_14 | 21580 | 23796 | + | SusD_RagB | SusD-like_3 |
| TC | MGYG000003252_424 | MGYG000003252_424_15 | 24699 | 28139 | + | 1.B.14.6.1 |
| pfam | MGYG000003252_424 | MGYG000003252_424_16 | 28163 | 30130 | + | SusD_RagB | SusD-like_3 |
| pfam | MGYG000003252_424 | MGYG000003252_424_17 | 30389 | 31135 | + | HAD_SAK_2 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_18 | 31281 | 33020 | + | PL1_2 |
| pfam | MGYG000003252_424 | MGYG000003252_424_19 | 33079 | 33747 | + | DUF3826 |
| NULL(UNKNOWN) | MGYG000003252_424 | MGYG000003252_424_20 | 33784 | 33921 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_21 | 33927 | 34853 | + | GH43_18 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_22 | 34877 | 38197 | + | GH142 | GH143 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_23 | 38326 | 41178 | + | CBM67 | GH78 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_24 | 41400 | 42734 | + | GH28 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_25 | 42764 | 44731 | + | CE19 |
| pfam | MGYG000003252_424 | MGYG000003252_424_26 | 44937 | 45734 | + | Patatin |
| NULL(UNKNOWN) | MGYG000003252_424 | MGYG000003252_424_27 | 45727 | 45873 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_28 | 45986 | 49846 | - | CBM67 | GH33 | GH78 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_29 | 49870 | 51336 | - | GH140 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_30 | 51362 | 52573 | - | GH105 |
| CAZyme | MGYG000003252_424 | MGYG000003252_424_31 | 52587 | 55055 | - | GH95 |
Gene ID: MGYG000003252_424_13
Type: TC
Location: 18257 - 21565 (+)
Type: TC
Location: 18257 - 21565 (+)
Gene ID: MGYG000003252_424_14
Type: pfam
Location: 21580 - 23796 (+)
Type: pfam
Location: 21580 - 23796 (+)
Gene ID: MGYG000003252_424_15
Type: TC
Location: 24699 - 28139 (+)
Type: TC
Location: 24699 - 28139 (+)
Gene ID: MGYG000003252_424_16
Type: pfam
Location: 28163 - 30130 (+)
Type: pfam
Location: 28163 - 30130 (+)
Gene ID: MGYG000003252_424_17
Type: pfam
Location: 30389 - 31135 (+)
Type: pfam
Location: 30389 - 31135 (+)
Gene ID: MGYG000003252_424_18
Type: CAZyme
Location: 31281 - 33020 (+)
Type: CAZyme
Location: 31281 - 33020 (+)
Gene ID: MGYG000003252_424_19
Type: pfam
Location: 33079 - 33747 (+)
Type: pfam
Location: 33079 - 33747 (+)
Gene ID: MGYG000003252_424_20
Type:
Location: 33784 - 33921 (+)
Type:
Location: 33784 - 33921 (+)
Gene ID: MGYG000003252_424_21
Type: CAZyme
Location: 33927 - 34853 (+)
Type: CAZyme
Location: 33927 - 34853 (+)
Gene ID: MGYG000003252_424_22
Type: CAZyme
Location: 34877 - 38197 (+)
Type: CAZyme
Location: 34877 - 38197 (+)
Gene ID: MGYG000003252_424_23
Type: CAZyme
Location: 38326 - 41178 (+)
Type: CAZyme
Location: 38326 - 41178 (+)
Gene ID: MGYG000003252_424_24
Type: CAZyme
Location: 41400 - 42734 (+)
Type: CAZyme
Location: 41400 - 42734 (+)
Gene ID: MGYG000003252_424_25
Type: CAZyme
Location: 42764 - 44731 (+)
Type: CAZyme
Location: 42764 - 44731 (+)
Gene ID: MGYG000003252_424_26
Type: pfam
Location: 44937 - 45734 (+)
Type: pfam
Location: 44937 - 45734 (+)
Gene ID: MGYG000003252_424_27
Type:
Location: 45727 - 45873 (-)
Type:
Location: 45727 - 45873 (-)
Gene ID: MGYG000003252_424_28
Type: CAZyme
Location: 45986 - 49846 (-)
Type: CAZyme
Location: 45986 - 49846 (-)
Gene ID: MGYG000003252_424_29
Type: CAZyme
Location: 49870 - 51336 (-)
Type: CAZyme
Location: 49870 - 51336 (-)
Gene ID: MGYG000003252_424_30
Type: CAZyme
Location: 51362 - 52573 (-)
Type: CAZyme
Location: 51362 - 52573 (-)
Gene ID: MGYG000003252_424_31
Type: CAZyme
Location: 52587 - 55055 (-)
Type: CAZyme
Location: 52587 - 55055 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900761785
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.