Cluster: MGYG000003234_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003234
- CGC Family ID: CGCFAM_01504
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003234_157 | MGYG000003234_157_9 | 10843 | 11592 | + | 9.B.18.1.2 |
| CAZyme | MGYG000003234_157 | MGYG000003234_157_10 | 11579 | 12385 | + | GT26 |
| pfam | MGYG000003234_157 | MGYG000003234_157_11 | 12378 | 13493 | + | Epimerase_2 |
| pfam | MGYG000003234_157 | MGYG000003234_157_12 | 13486 | 14592 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | MGYG000003234_157 | MGYG000003234_157_13 | 14589 | 15668 | + | GT4 |
| CAZyme | MGYG000003234_157 | MGYG000003234_157_14 | 15649 | 16407 | + | GT32 |
| CAZyme | MGYG000003234_157 | MGYG000003234_157_15 | 16404 | 17324 | + | GT2 |
| NULL(UNKNOWN) | MGYG000003234_157 | MGYG000003234_157_16 | 17543 | 18601 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003234_157 | MGYG000003234_157_17 | 18603 | 19553 | + | GT2 |
| NULL(UNKNOWN) | MGYG000003234_157 | MGYG000003234_157_18 | 19561 | 20463 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000003234_157 | MGYG000003234_157_19 | 20399 | 20986 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003234_157 | MGYG000003234_157_20 | 21003 | 22394 | + | 2.A.66.2.23 |
Gene ID: MGYG000003234_157_9
Type: TC
Location: 10843 - 11592 (+)
Type: TC
Location: 10843 - 11592 (+)
Gene ID: MGYG000003234_157_10
Type: CAZyme
Location: 11579 - 12385 (+)
Type: CAZyme
Location: 11579 - 12385 (+)
Gene ID: MGYG000003234_157_11
Type: pfam
Location: 12378 - 13493 (+)
Type: pfam
Location: 12378 - 13493 (+)
Gene ID: MGYG000003234_157_12
Type: pfam
Location: 13486 - 14592 (+)
Type: pfam
Location: 13486 - 14592 (+)
Gene ID: MGYG000003234_157_13
Type: CAZyme
Location: 14589 - 15668 (+)
Type: CAZyme
Location: 14589 - 15668 (+)
Gene ID: MGYG000003234_157_14
Type: CAZyme
Location: 15649 - 16407 (+)
Type: CAZyme
Location: 15649 - 16407 (+)
Gene ID: MGYG000003234_157_15
Type: CAZyme
Location: 16404 - 17324 (+)
Type: CAZyme
Location: 16404 - 17324 (+)
Gene ID: MGYG000003234_157_16
Type:
Location: 17543 - 18601 (+)
Type:
Location: 17543 - 18601 (+)
Gene ID: MGYG000003234_157_17
Type: CAZyme
Location: 18603 - 19553 (+)
Type: CAZyme
Location: 18603 - 19553 (+)
Gene ID: MGYG000003234_157_18
Type:
Location: 19561 - 20463 (+)
Type:
Location: 19561 - 20463 (+)
Gene ID: MGYG000003234_157_19
Type:
Location: 20399 - 20986 (-)
Type:
Location: 20399 - 20986 (-)
Gene ID: MGYG000003234_157_20
Type: TC
Location: 21003 - 22394 (+)
Type: TC
Location: 21003 - 22394 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.