Cluster: MGYG000003225_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003225
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003225_116 | MGYG000003225_116_8 | 8208 | 9290 | - | 3.A.1.17.10 |
| NULL(UNKNOWN) | MGYG000003225_116 | MGYG000003225_116_9 | 9590 | 10645 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003225_116 | MGYG000003225_116_10 | 10648 | 12459 | - | 3.D.1.5.1 |
| STP | MGYG000003225_116 | MGYG000003225_116_11 | 12453 | 14285 | - | Pyr_redox_2 |
| CAZyme | MGYG000003225_116 | MGYG000003225_116_12 | 14542 | 15924 | - | GH4 |
| TC | MGYG000003225_116 | MGYG000003225_116_13 | 15928 | 17544 | - | 4.A.1.1.3 |
| pfam | MGYG000003225_116 | MGYG000003225_116_14 | 17644 | 18510 | - | PRD | PRD | CAT_RBD |
| TC | MGYG000003225_116 | MGYG000003225_116_15 | 18517 | 19029 | - | 4.A.1.2.5 |
| STP | MGYG000003225_116 | MGYG000003225_116_16 | 19373 | 20134 | - | Fer4 |
| TC | MGYG000003225_116 | MGYG000003225_116_17 | 20756 | 23005 | - | 1.I.1.1.3 |
| STP | MGYG000003225_116 | MGYG000003225_116_18 | 23513 | 24475 | + | FHA |
| STP | MGYG000003225_116 | MGYG000003225_116_19 | 24647 | 26731 | + | Pkinase |
| TC | MGYG000003225_116 | MGYG000003225_116_20 | 26983 | 29322 | + | 3.A.3.5.15 |
Gene ID: MGYG000003225_116_8
Type: TC
Location: 8208 - 9290 (-)
Type: TC
Location: 8208 - 9290 (-)
Gene ID: MGYG000003225_116_9
Type:
Location: 9590 - 10645 (-)
Type:
Location: 9590 - 10645 (-)
Gene ID: MGYG000003225_116_10
Type: TC
Location: 10648 - 12459 (-)
Type: TC
Location: 10648 - 12459 (-)
Gene ID: MGYG000003225_116_11
Type: STP
Location: 12453 - 14285 (-)
Type: STP
Location: 12453 - 14285 (-)
Gene ID: MGYG000003225_116_12
Type: CAZyme
Location: 14542 - 15924 (-)
Type: CAZyme
Location: 14542 - 15924 (-)
Gene ID: MGYG000003225_116_13
Type: TC
Location: 15928 - 17544 (-)
Type: TC
Location: 15928 - 17544 (-)
Gene ID: MGYG000003225_116_14
Type: pfam
Location: 17644 - 18510 (-)
Type: pfam
Location: 17644 - 18510 (-)
Gene ID: MGYG000003225_116_15
Type: TC
Location: 18517 - 19029 (-)
Type: TC
Location: 18517 - 19029 (-)
Gene ID: MGYG000003225_116_16
Type: STP
Location: 19373 - 20134 (-)
Type: STP
Location: 19373 - 20134 (-)
Gene ID: MGYG000003225_116_17
Type: TC
Location: 20756 - 23005 (-)
Type: TC
Location: 20756 - 23005 (-)
Gene ID: MGYG000003225_116_18
Type: STP
Location: 23513 - 24475 (+)
Type: STP
Location: 23513 - 24475 (+)
Gene ID: MGYG000003225_116_19
Type: STP
Location: 24647 - 26731 (+)
Type: STP
Location: 24647 - 26731 (+)
Gene ID: MGYG000003225_116_20
Type: TC
Location: 26983 - 29322 (+)
Type: TC
Location: 26983 - 29322 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900760905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.