Cluster: MGYG000003225_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003225
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003225_116 | MGYG000003225_116_1 | 3 | 302 | - | 9.B.143.2.3 |
| pfam | MGYG000003225_116 | MGYG000003225_116_2 | 556 | 2691 | + | Radical_SAM_N | DUF3362 |
| TC | MGYG000003225_116 | MGYG000003225_116_3 | 2818 | 4188 | - | 4.A.1.2.11 |
| CAZyme | MGYG000003225_116 | MGYG000003225_116_4 | 4200 | 5678 | - | GH1 |
Gene ID: MGYG000003225_116_1
Type: TC
Location: 3 - 302 (-)
Type: TC
Location: 3 - 302 (-)
Gene ID: MGYG000003225_116_2
Type: pfam
Location: 556 - 2691 (+)
Type: pfam
Location: 556 - 2691 (+)
Gene ID: MGYG000003225_116_3
Type: TC
Location: 2818 - 4188 (-)
Type: TC
Location: 2818 - 4188 (-)
Gene ID: MGYG000003225_116_4
Type: CAZyme
Location: 4200 - 5678 (-)
Type: CAZyme
Location: 4200 - 5678 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900760905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003225_116_3 | vegan > omnivore | 1.14711 | 0.00566 |
| MGYG000003225_116_4 | vegan > omnivore | 1.20290 | 0.00566 |