Cluster: MGYG000003209_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003209
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003209_55 | MGYG000003209_55_6 | 8681 | 9973 | - | 2.A.1.2.93 |
| STP | MGYG000003209_55 | MGYG000003209_55_7 | 10281 | 10922 | + | TetR_N |
| CAZyme | MGYG000003209_55 | MGYG000003209_55_8 | 11026 | 12339 | - | GH140 |
| TC | MGYG000003209_55 | MGYG000003209_55_9 | 12550 | 13977 | - | 4.A.1.2.11 |
| peptidase | MGYG000003209_55 | MGYG000003209_55_10 | 14468 | 15805 | + | S09.UPW |
| pfam | MGYG000003209_55 | MGYG000003209_55_11 | 16072 | 17583 | + | Sde182_NH-like |
| CAZyme | MGYG000003209_55 | MGYG000003209_55_12 | 17799 | 19229 | - | GH1 |
| pfam | MGYG000003209_55 | MGYG000003209_55_13 | 19701 | 20345 | - | DUF4867 |
| peptidase | MGYG000003209_55 | MGYG000003209_55_14 | 20523 | 21503 | - | S09.UPC |
| TC | MGYG000003209_55 | MGYG000003209_55_15 | 21610 | 22980 | - | 4.A.1.2.6 |
Gene ID: MGYG000003209_55_6
Type: TC
Location: 8681 - 9973 (-)
Type: TC
Location: 8681 - 9973 (-)
Gene ID: MGYG000003209_55_7
Type: STP
Location: 10281 - 10922 (+)
Type: STP
Location: 10281 - 10922 (+)
Gene ID: MGYG000003209_55_8
Type: CAZyme
Location: 11026 - 12339 (-)
Type: CAZyme
Location: 11026 - 12339 (-)
Gene ID: MGYG000003209_55_9
Type: TC
Location: 12550 - 13977 (-)
Type: TC
Location: 12550 - 13977 (-)
Gene ID: MGYG000003209_55_10
Type: peptidase
Location: 14468 - 15805 (+)
Type: peptidase
Location: 14468 - 15805 (+)
Gene ID: MGYG000003209_55_11
Type: pfam
Location: 16072 - 17583 (+)
Type: pfam
Location: 16072 - 17583 (+)
Gene ID: MGYG000003209_55_12
Type: CAZyme
Location: 17799 - 19229 (-)
Type: CAZyme
Location: 17799 - 19229 (-)
Gene ID: MGYG000003209_55_13
Type: pfam
Location: 19701 - 20345 (-)
Type: pfam
Location: 19701 - 20345 (-)
Gene ID: MGYG000003209_55_14
Type: peptidase
Location: 20523 - 21503 (-)
Type: peptidase
Location: 20523 - 21503 (-)
Gene ID: MGYG000003209_55_15
Type: TC
Location: 21610 - 22980 (-)
Type: TC
Location: 21610 - 22980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900760215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.