Cluster: MGYG000003208_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_00293
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_14 | MGYG000003208_14_140 | 139975 | 141669 | - | AA3_2 |
| sulfatase | MGYG000003208_14 | MGYG000003208_14_141 | 141814 | 143286 | - | S1_6 |
| STP | MGYG000003208_14 | MGYG000003208_14_142 | 143348 | 143941 | - | TetR_N |
| TC | MGYG000003208_14 | MGYG000003208_14_143 | 144345 | 145523 | - | 3.A.1.12.12 |
| TC | MGYG000003208_14 | MGYG000003208_14_144 | 145520 | 146365 | - | 3.A.1.12.12 |
| TC | MGYG000003208_14 | MGYG000003208_14_145 | 146435 | 147382 | - | 3.A.1.12.12 |
Gene ID: MGYG000003208_14_140
Type: CAZyme
Location: 139975 - 141669 (-)
Type: CAZyme
Location: 139975 - 141669 (-)
Gene ID: MGYG000003208_14_141
Type: sulfatase
Location: 141814 - 143286 (-)
Type: sulfatase
Location: 141814 - 143286 (-)
Gene ID: MGYG000003208_14_142
Type: STP
Location: 143348 - 143941 (-)
Type: STP
Location: 143348 - 143941 (-)
Gene ID: MGYG000003208_14_143
Type: TC
Location: 144345 - 145523 (-)
Type: TC
Location: 144345 - 145523 (-)
Gene ID: MGYG000003208_14_144
Type: TC
Location: 145520 - 146365 (-)
Type: TC
Location: 145520 - 146365 (-)
Gene ID: MGYG000003208_14_145
Type: TC
Location: 146435 - 147382 (-)
Type: TC
Location: 146435 - 147382 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.