Cluster: MGYG000003208_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_14 | MGYG000003208_14_48 | 48767 | 50047 | + | 3.A.5.1.1 |
| TC | MGYG000003208_14 | MGYG000003208_14_49 | 50044 | 50715 | + | 3.A.1.140.1 |
| TC | MGYG000003208_14 | MGYG000003208_14_50 | 50712 | 51734 | + | 3.A.1.140.1 |
| STP | MGYG000003208_14 | MGYG000003208_14_51 | 51864 | 52718 | + | Sigma70_r2 | Sigma70_r4 |
| CAZyme | MGYG000003208_14 | MGYG000003208_14_52 | 52826 | 53548 | - | GT51 |
Gene ID: MGYG000003208_14_48
Type: TC
Location: 48767 - 50047 (+)
Type: TC
Location: 48767 - 50047 (+)
Gene ID: MGYG000003208_14_49
Type: TC
Location: 50044 - 50715 (+)
Type: TC
Location: 50044 - 50715 (+)
Gene ID: MGYG000003208_14_50
Type: TC
Location: 50712 - 51734 (+)
Type: TC
Location: 50712 - 51734 (+)
Gene ID: MGYG000003208_14_51
Type: STP
Location: 51864 - 52718 (+)
Type: STP
Location: 51864 - 52718 (+)
Gene ID: MGYG000003208_14_52
Type: CAZyme
Location: 52826 - 53548 (-)
Type: CAZyme
Location: 52826 - 53548 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.