Cluster: MGYG000003208_CGC43
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_00144
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_76 | MGYG000003208_76_136 | 147674 | 149296 | - | GT83 |
| pfam | MGYG000003208_76 | MGYG000003208_76_137 | 149298 | 150677 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | MGYG000003208_76 | MGYG000003208_76_138 | 150674 | 151075 | - | 2.A.7.33.2 |
| TC | MGYG000003208_76 | MGYG000003208_76_139 | 151072 | 151419 | - | 2.A.7.22.2 |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_140 | 151416 | 153071 | - | GT83 |
| pfam | MGYG000003208_76 | MGYG000003208_76_141 | 153068 | 153952 | - | Polysacc_deac_1 |
| pfam | MGYG000003208_76 | MGYG000003208_76_142 | 153952 | 155943 | - | Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_143 | 155940 | 156971 | - | GT2 |
| NULL(UNKNOWN) | MGYG000003208_76 | MGYG000003208_76_144 | 157386 | 158198 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000003208_76 | MGYG000003208_76_145 | 158307 | 159221 | + | Phage_integrase |
| TC | MGYG000003208_76 | MGYG000003208_76_146 | 159271 | 160479 | - | 2.A.1.2.9 |
| TF | MGYG000003208_76 | MGYG000003208_76_147 | 160634 | 161509 | + | HTH_1 |
| pfam | MGYG000003208_76 | MGYG000003208_76_148 | 161486 | 162682 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TC | MGYG000003208_76 | MGYG000003208_76_149 | 162702 | 164186 | - | 2.A.3.4.3 |
Gene ID: MGYG000003208_76_136
Type: CAZyme
Location: 147674 - 149296 (-)
Type: CAZyme
Location: 147674 - 149296 (-)
Gene ID: MGYG000003208_76_137
Type: pfam
Location: 149298 - 150677 (-)
Type: pfam
Location: 149298 - 150677 (-)
Gene ID: MGYG000003208_76_138
Type: TC
Location: 150674 - 151075 (-)
Type: TC
Location: 150674 - 151075 (-)
Gene ID: MGYG000003208_76_139
Type: TC
Location: 151072 - 151419 (-)
Type: TC
Location: 151072 - 151419 (-)
Gene ID: MGYG000003208_76_140
Type: CAZyme
Location: 151416 - 153071 (-)
Type: CAZyme
Location: 151416 - 153071 (-)
Gene ID: MGYG000003208_76_141
Type: pfam
Location: 153068 - 153952 (-)
Type: pfam
Location: 153068 - 153952 (-)
Gene ID: MGYG000003208_76_142
Type: pfam
Location: 153952 - 155943 (-)
Type: pfam
Location: 153952 - 155943 (-)
Gene ID: MGYG000003208_76_143
Type: CAZyme
Location: 155940 - 156971 (-)
Type: CAZyme
Location: 155940 - 156971 (-)
Gene ID: MGYG000003208_76_144
Type:
Location: 157386 - 158198 (+)
Type:
Location: 157386 - 158198 (+)
Gene ID: MGYG000003208_76_145
Type: pfam
Location: 158307 - 159221 (+)
Type: pfam
Location: 158307 - 159221 (+)
Gene ID: MGYG000003208_76_146
Type: TC
Location: 159271 - 160479 (-)
Type: TC
Location: 159271 - 160479 (-)
Gene ID: MGYG000003208_76_147
Type: TF
Location: 160634 - 161509 (+)
Type: TF
Location: 160634 - 161509 (+)
Gene ID: MGYG000003208_76_148
Type: pfam
Location: 161486 - 162682 (-)
Type: pfam
Location: 161486 - 162682 (-)
Gene ID: MGYG000003208_76_149
Type: TC
Location: 162702 - 164186 (-)
Type: TC
Location: 162702 - 164186 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.