Cluster: MGYG000003208_CGC42
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_06214
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_76 | MGYG000003208_76_17 | 18101 | 20260 | - | GH13_11 |
| pfam | MGYG000003208_76 | MGYG000003208_76_18 | 20382 | 20651 | - | DUF2934 |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_19 | 20676 | 23432 | - | GH13_26 |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_20 | 23429 | 25513 | - | GH77 |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_21 | 25510 | 27255 | - | GH13_10 |
| CAZyme | MGYG000003208_76 | MGYG000003208_76_22 | 27275 | 28828 | - | GT5 |
| pfam | MGYG000003208_76 | MGYG000003208_76_23 | 29322 | 30275 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | MGYG000003208_76 | MGYG000003208_76_24 | 30312 | 30743 | - | 9.B.27.3.3 |
Gene ID: MGYG000003208_76_17
Type: CAZyme
Location: 18101 - 20260 (-)
Type: CAZyme
Location: 18101 - 20260 (-)
Gene ID: MGYG000003208_76_18
Type: pfam
Location: 20382 - 20651 (-)
Type: pfam
Location: 20382 - 20651 (-)
Gene ID: MGYG000003208_76_19
Type: CAZyme
Location: 20676 - 23432 (-)
Type: CAZyme
Location: 20676 - 23432 (-)
Gene ID: MGYG000003208_76_20
Type: CAZyme
Location: 23429 - 25513 (-)
Type: CAZyme
Location: 23429 - 25513 (-)
Gene ID: MGYG000003208_76_21
Type: CAZyme
Location: 25510 - 27255 (-)
Type: CAZyme
Location: 25510 - 27255 (-)
Gene ID: MGYG000003208_76_22
Type: CAZyme
Location: 27275 - 28828 (-)
Type: CAZyme
Location: 27275 - 28828 (-)
Gene ID: MGYG000003208_76_23
Type: pfam
Location: 29322 - 30275 (-)
Type: pfam
Location: 29322 - 30275 (-)
Gene ID: MGYG000003208_76_24
Type: TC
Location: 30312 - 30743 (-)
Type: TC
Location: 30312 - 30743 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.