Cluster: MGYG000003208_CGC40
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_76 | MGYG000003208_76_3 | 2980 | 3885 | + | CE16 |
| pfam | MGYG000003208_76 | MGYG000003208_76_4 | 3882 | 4361 | - | 3-dmu-9_3-mt |
| pfam | MGYG000003208_76 | MGYG000003208_76_5 | 4396 | 4788 | - | SnoaL | SnoaL_2 |
| TC | MGYG000003208_76 | MGYG000003208_76_6 | 4799 | 5419 | - | 2.A.76.1.1 |
Gene ID: MGYG000003208_76_3
Type: CAZyme
Location: 2980 - 3885 (+)
Type: CAZyme
Location: 2980 - 3885 (+)
Gene ID: MGYG000003208_76_4
Type: pfam
Location: 3882 - 4361 (-)
Type: pfam
Location: 3882 - 4361 (-)
Gene ID: MGYG000003208_76_5
Type: pfam
Location: 4396 - 4788 (-)
Type: pfam
Location: 4396 - 4788 (-)
Gene ID: MGYG000003208_76_6
Type: TC
Location: 4799 - 5419 (-)
Type: TC
Location: 4799 - 5419 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.