Cluster: MGYG000003208_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_13 | MGYG000003208_13_167 | 172294 | 173715 | - | GH23 |
| pfam | MGYG000003208_13 | MGYG000003208_13_168 | 173952 | 174758 | + | TatD_DNase |
| TC | MGYG000003208_13 | MGYG000003208_13_169 | 174855 | 176336 | + | 1.B.52.2.1 |
Gene ID: MGYG000003208_13_167
Type: CAZyme
Location: 172294 - 173715 (-)
Type: CAZyme
Location: 172294 - 173715 (-)
Gene ID: MGYG000003208_13_168
Type: pfam
Location: 173952 - 174758 (+)
Type: pfam
Location: 173952 - 174758 (+)
Gene ID: MGYG000003208_13_169
Type: TC
Location: 174855 - 176336 (+)
Type: TC
Location: 174855 - 176336 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.