Cluster: MGYG000003208_CGC38
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_73 | MGYG000003208_73_75 | 80258 | 81847 | + | CBM20 | GH13_6 |
| pfam | MGYG000003208_73 | MGYG000003208_73_76 | 81910 | 82329 | - | SspB |
| TC | MGYG000003208_73 | MGYG000003208_73_77 | 82347 | 82964 | - | 1.A.12.3.1 |
| pfam | MGYG000003208_73 | MGYG000003208_73_78 | 83114 | 83893 | - | Cytochrom_C1 | Cytochrom_C1 |
| TC | MGYG000003208_73 | MGYG000003208_73_79 | 83893 | 85104 | - | 3.E.2.1.1 |
| TC | MGYG000003208_73 | MGYG000003208_73_80 | 85104 | 85697 | - | 3.D.3.1.1 |
| pfam | MGYG000003208_73 | MGYG000003208_73_81 | 85964 | 86356 | - | Ribosomal_S9 |
| pfam | MGYG000003208_73 | MGYG000003208_73_82 | 86371 | 86799 | - | Ribosomal_L13 |
| TC | MGYG000003208_73 | MGYG000003208_73_83 | 87048 | 88088 | + | 8.A.5.1.5 |
Gene ID: MGYG000003208_73_75
Type: CAZyme
Location: 80258 - 81847 (+)
Type: CAZyme
Location: 80258 - 81847 (+)
Gene ID: MGYG000003208_73_76
Type: pfam
Location: 81910 - 82329 (-)
Type: pfam
Location: 81910 - 82329 (-)
Gene ID: MGYG000003208_73_77
Type: TC
Location: 82347 - 82964 (-)
Type: TC
Location: 82347 - 82964 (-)
Gene ID: MGYG000003208_73_78
Type: pfam
Location: 83114 - 83893 (-)
Type: pfam
Location: 83114 - 83893 (-)
Gene ID: MGYG000003208_73_79
Type: TC
Location: 83893 - 85104 (-)
Type: TC
Location: 83893 - 85104 (-)
Gene ID: MGYG000003208_73_80
Type: TC
Location: 85104 - 85697 (-)
Type: TC
Location: 85104 - 85697 (-)
Gene ID: MGYG000003208_73_81
Type: pfam
Location: 85964 - 86356 (-)
Type: pfam
Location: 85964 - 86356 (-)
Gene ID: MGYG000003208_73_82
Type: pfam
Location: 86371 - 86799 (-)
Type: pfam
Location: 86371 - 86799 (-)
Gene ID: MGYG000003208_73_83
Type: TC
Location: 87048 - 88088 (+)
Type: TC
Location: 87048 - 88088 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.