Cluster: MGYG000003208_CGC34
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_64 | MGYG000003208_64_136 | 138245 | 139174 | + | 2.A.7.3.47 |
| TC | MGYG000003208_64 | MGYG000003208_64_137 | 139299 | 142220 | + | 2.A.63.1.1 |
| TC | MGYG000003208_64 | MGYG000003208_64_138 | 142220 | 142564 | + | 2.A.63.1.1 |
| TC | MGYG000003208_64 | MGYG000003208_64_139 | 142561 | 144243 | + | 2.A.63.1.1 |
| pfam | MGYG000003208_64 | MGYG000003208_64_140 | 144240 | 144728 | + | MNHE |
| TC | MGYG000003208_64 | MGYG000003208_64_141 | 144725 | 145003 | + | 2.A.63.1.1 |
| TC | MGYG000003208_64 | MGYG000003208_64_142 | 145000 | 145353 | + | 2.A.63.1.1 |
| CAZyme | MGYG000003208_64 | MGYG000003208_64_143 | 145542 | 148544 | - | CBM5 |
Gene ID: MGYG000003208_64_136
Type: TC
Location: 138245 - 139174 (+)
Type: TC
Location: 138245 - 139174 (+)
Gene ID: MGYG000003208_64_137
Type: TC
Location: 139299 - 142220 (+)
Type: TC
Location: 139299 - 142220 (+)
Gene ID: MGYG000003208_64_138
Type: TC
Location: 142220 - 142564 (+)
Type: TC
Location: 142220 - 142564 (+)
Gene ID: MGYG000003208_64_139
Type: TC
Location: 142561 - 144243 (+)
Type: TC
Location: 142561 - 144243 (+)
Gene ID: MGYG000003208_64_140
Type: pfam
Location: 144240 - 144728 (+)
Type: pfam
Location: 144240 - 144728 (+)
Gene ID: MGYG000003208_64_141
Type: TC
Location: 144725 - 145003 (+)
Type: TC
Location: 144725 - 145003 (+)
Gene ID: MGYG000003208_64_142
Type: TC
Location: 145000 - 145353 (+)
Type: TC
Location: 145000 - 145353 (+)
Gene ID: MGYG000003208_64_143
Type: CAZyme
Location: 145542 - 148544 (-)
Type: CAZyme
Location: 145542 - 148544 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.