Cluster: MGYG000003208_CGC31
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_00060
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_62 | MGYG000003208_62_15 | 20672 | 23482 | - | GH166 |
| pfam | MGYG000003208_62 | MGYG000003208_62_16 | 23538 | 24470 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | MGYG000003208_62 | MGYG000003208_62_17 | 24955 | 26271 | - | 1.B.25.1.3 |
Gene ID: MGYG000003208_62_15
Type: CAZyme
Location: 20672 - 23482 (-)
Type: CAZyme
Location: 20672 - 23482 (-)
Gene ID: MGYG000003208_62_16
Type: pfam
Location: 23538 - 24470 (-)
Type: pfam
Location: 23538 - 24470 (-)
Gene ID: MGYG000003208_62_17
Type: TC
Location: 24955 - 26271 (-)
Type: TC
Location: 24955 - 26271 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.