Cluster: MGYG000003208_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_09068
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_37 | MGYG000003208_37_43 | 47024 | 49378 | + | 3.A.3.5.4 |
| STP | MGYG000003208_37 | MGYG000003208_37_44 | 49488 | 49688 | + | HMA |
| NULL(UNKNOWN) | MGYG000003208_37 | MGYG000003208_37_45 | 50098 | 50304 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003208_37 | MGYG000003208_37_46 | 50524 | 52530 | + | AA1 |
| NULL(UNKNOWN) | MGYG000003208_37 | MGYG000003208_37_47 | 52543 | 52668 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003208_37 | MGYG000003208_37_48 | 52640 | 53620 | + | 1.B.76.1.6 |
Gene ID: MGYG000003208_37_43
Type: TC
Location: 47024 - 49378 (+)
Type: TC
Location: 47024 - 49378 (+)
Gene ID: MGYG000003208_37_44
Type: STP
Location: 49488 - 49688 (+)
Type: STP
Location: 49488 - 49688 (+)
Gene ID: MGYG000003208_37_45
Type:
Location: 50098 - 50304 (+)
Type:
Location: 50098 - 50304 (+)
Gene ID: MGYG000003208_37_46
Type: CAZyme
Location: 50524 - 52530 (+)
Type: CAZyme
Location: 50524 - 52530 (+)
Gene ID: MGYG000003208_37_47
Type:
Location: 52543 - 52668 (+)
Type:
Location: 52543 - 52668 (+)
Gene ID: MGYG000003208_37_48
Type: TC
Location: 52640 - 53620 (+)
Type: TC
Location: 52640 - 53620 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.