Cluster: MGYG000003208_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_08922
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_33 | MGYG000003208_33_59 | 59651 | 61033 | - | 2.A.66.1.12 |
| pfam | MGYG000003208_33 | MGYG000003208_33_60 | 61174 | 62316 | + | 2-Hacid_dh | 2-Hacid_dh_C | DUF3410 |
| NULL(UNKNOWN) | MGYG000003208_33 | MGYG000003208_33_61 | 62458 | 62631 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003208_33 | MGYG000003208_33_62 | 62886 | 64661 | + | 3.A.1.201.17 |
| CAZyme | MGYG000003208_33 | MGYG000003208_33_63 | 64726 | 66702 | - | GH23 |
| TC | MGYG000003208_33 | MGYG000003208_33_64 | 66868 | 68787 | + | 3.A.1.120.6 |
Gene ID: MGYG000003208_33_59
Type: TC
Location: 59651 - 61033 (-)
Type: TC
Location: 59651 - 61033 (-)
Gene ID: MGYG000003208_33_60
Type: pfam
Location: 61174 - 62316 (+)
Type: pfam
Location: 61174 - 62316 (+)
Gene ID: MGYG000003208_33_61
Type:
Location: 62458 - 62631 (-)
Type:
Location: 62458 - 62631 (-)
Gene ID: MGYG000003208_33_62
Type: TC
Location: 62886 - 64661 (+)
Type: TC
Location: 62886 - 64661 (+)
Gene ID: MGYG000003208_33_63
Type: CAZyme
Location: 64726 - 66702 (-)
Type: CAZyme
Location: 64726 - 66702 (-)
Gene ID: MGYG000003208_33_64
Type: TC
Location: 66868 - 68787 (+)
Type: TC
Location: 66868 - 68787 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.