Cluster: MGYG000003208_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_24 | MGYG000003208_24_22 | 21305 | 22387 | + | 9.B.146.1.6 |
| pfam | MGYG000003208_24 | MGYG000003208_24_23 | 22394 | 23740 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | MGYG000003208_24 | MGYG000003208_24_24 | 23737 | 24960 | + | 2.A.103.1.1 |
| CAZyme | MGYG000003208_24 | MGYG000003208_24_25 | 24950 | 26020 | + | GT28 |
Gene ID: MGYG000003208_24_22
Type: TC
Location: 21305 - 22387 (+)
Type: TC
Location: 21305 - 22387 (+)
Gene ID: MGYG000003208_24_23
Type: pfam
Location: 22394 - 23740 (+)
Type: pfam
Location: 22394 - 23740 (+)
Gene ID: MGYG000003208_24_24
Type: TC
Location: 23737 - 24960 (+)
Type: TC
Location: 23737 - 24960 (+)
Gene ID: MGYG000003208_24_25
Type: CAZyme
Location: 24950 - 26020 (+)
Type: CAZyme
Location: 24950 - 26020 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.