Cluster: MGYG000003208_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_00529
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_23 | MGYG000003208_23_18 | 15504 | 17690 | + | 2.A.21.9.1 |
| TC | MGYG000003208_23 | MGYG000003208_23_19 | 17694 | 18821 | - | 9.B.34.1.4 |
| CAZyme | MGYG000003208_23 | MGYG000003208_23_20 | 18912 | 21149 | - | CBM48 | GH13_9 |
| CAZyme | MGYG000003208_23 | MGYG000003208_23_21 | 21146 | 24493 | - | GH13_16 |
| CAZyme | MGYG000003208_23 | MGYG000003208_23_22 | 24562 | 26550 | - | GH13_3 |
Gene ID: MGYG000003208_23_18
Type: TC
Location: 15504 - 17690 (+)
Type: TC
Location: 15504 - 17690 (+)
Gene ID: MGYG000003208_23_19
Type: TC
Location: 17694 - 18821 (-)
Type: TC
Location: 17694 - 18821 (-)
Gene ID: MGYG000003208_23_20
Type: CAZyme
Location: 18912 - 21149 (-)
Type: CAZyme
Location: 18912 - 21149 (-)
Gene ID: MGYG000003208_23_21
Type: CAZyme
Location: 21146 - 24493 (-)
Type: CAZyme
Location: 21146 - 24493 (-)
Gene ID: MGYG000003208_23_22
Type: CAZyme
Location: 24562 - 26550 (-)
Type: CAZyme
Location: 24562 - 26550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.