Cluster: MGYG000003208_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_20 | MGYG000003208_20_40 | 43075 | 44415 | - | GT2 |
| CAZyme | MGYG000003208_20 | MGYG000003208_20_41 | 44418 | 46415 | - | CE4 | GH153 |
| TC | MGYG000003208_20 | MGYG000003208_20_42 | 46428 | 48908 | - | 1.B.55.1.1 |
| pfam | MGYG000003208_20 | MGYG000003208_20_43 | 49141 | 50637 | - | DUF945 |
| NULL(UNKNOWN) | MGYG000003208_20 | MGYG000003208_20_44 | 50775 | 51407 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003208_20 | MGYG000003208_20_45 | 51504 | 52946 | - | 2.A.6.2.14 |
| TC | MGYG000003208_20 | MGYG000003208_20_46 | 52943 | 53833 | - | 8.A.1.7.1 |
Gene ID: MGYG000003208_20_40
Type: CAZyme
Location: 43075 - 44415 (-)
Type: CAZyme
Location: 43075 - 44415 (-)
Gene ID: MGYG000003208_20_41
Type: CAZyme
Location: 44418 - 46415 (-)
Type: CAZyme
Location: 44418 - 46415 (-)
Gene ID: MGYG000003208_20_42
Type: TC
Location: 46428 - 48908 (-)
Type: TC
Location: 46428 - 48908 (-)
Gene ID: MGYG000003208_20_43
Type: pfam
Location: 49141 - 50637 (-)
Type: pfam
Location: 49141 - 50637 (-)
Gene ID: MGYG000003208_20_44
Type:
Location: 50775 - 51407 (-)
Type:
Location: 50775 - 51407 (-)
Gene ID: MGYG000003208_20_45
Type: TC
Location: 51504 - 52946 (-)
Type: TC
Location: 51504 - 52946 (-)
Gene ID: MGYG000003208_20_46
Type: TC
Location: 52943 - 53833 (-)
Type: TC
Location: 52943 - 53833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.