Cluster: MGYG000003208_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_03927
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003208_18 | MGYG000003208_18_187 | 217822 | 218634 | - | 8.A.5.1.4 |
| pfam | MGYG000003208_18 | MGYG000003208_18_188 | 218631 | 219806 | - | FAD_binding_2 | DAO | NAD_binding_8 |
| TC | MGYG000003208_18 | MGYG000003208_18_189 | 219862 | 220197 | - | 2.A.7.1.11 |
| TF | MGYG000003208_18 | MGYG000003208_18_190 | 220399 | 221289 | + | HTH_1 |
| CAZyme | MGYG000003208_18 | MGYG000003208_18_191 | 221313 | 222590 | + | GT30 |
| TC | MGYG000003208_18 | MGYG000003208_18_192 | 222618 | 224057 | - | 2.A.6.2.27 |
| pfam | MGYG000003208_18 | MGYG000003208_18_193 | 224505 | 226394 | + | ThiC_Rad_SAM | ThiC-associated |
| TC | MGYG000003208_18 | MGYG000003208_18_194 | 226539 | 227828 | + | 2.A.39.1.2 |
Gene ID: MGYG000003208_18_187
Type: TC
Location: 217822 - 218634 (-)
Type: TC
Location: 217822 - 218634 (-)
Gene ID: MGYG000003208_18_188
Type: pfam
Location: 218631 - 219806 (-)
Type: pfam
Location: 218631 - 219806 (-)
Gene ID: MGYG000003208_18_189
Type: TC
Location: 219862 - 220197 (-)
Type: TC
Location: 219862 - 220197 (-)
Gene ID: MGYG000003208_18_190
Type: TF
Location: 220399 - 221289 (+)
Type: TF
Location: 220399 - 221289 (+)
Gene ID: MGYG000003208_18_191
Type: CAZyme
Location: 221313 - 222590 (+)
Type: CAZyme
Location: 221313 - 222590 (+)
Gene ID: MGYG000003208_18_192
Type: TC
Location: 222618 - 224057 (-)
Type: TC
Location: 222618 - 224057 (-)
Gene ID: MGYG000003208_18_193
Type: pfam
Location: 224505 - 226394 (+)
Type: pfam
Location: 224505 - 226394 (+)
Gene ID: MGYG000003208_18_194
Type: TC
Location: 226539 - 227828 (+)
Type: TC
Location: 226539 - 227828 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.