Cluster: MGYG000003208_CGC13
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003208
- CGC Family ID: CGCFAM_03103
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_18 | MGYG000003208_18_173 | 202713 | 203843 | + | GT4 |
| pfam | MGYG000003208_18 | MGYG000003208_18_174 | 203843 | 204739 | + | Mig-14 | Acetyltransf_6 |
| STP | MGYG000003208_18 | MGYG000003208_18_175 | 204736 | 206133 | + | PIG-L |
| CAZyme | MGYG000003208_18 | MGYG000003208_18_176 | 206145 | 207113 | + | GT4 |
| NULL(UNKNOWN) | MGYG000003208_18 | MGYG000003208_18_177 | 207166 | 207927 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003208_18 | MGYG000003208_18_178 | 207973 | 209058 | + | GT4 |
| NULL(UNKNOWN) | MGYG000003208_18 | MGYG000003208_18_179 | 209047 | 209652 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003208_18 | MGYG000003208_18_180 | 209764 | 210942 | + | 9.B.67.6.3 |
| TC | MGYG000003208_18 | MGYG000003208_18_181 | 210952 | 212760 | + | 3.A.1.106.1 |
Gene ID: MGYG000003208_18_173
Type: CAZyme
Location: 202713 - 203843 (+)
Type: CAZyme
Location: 202713 - 203843 (+)
Gene ID: MGYG000003208_18_174
Type: pfam
Location: 203843 - 204739 (+)
Type: pfam
Location: 203843 - 204739 (+)
Gene ID: MGYG000003208_18_175
Type: STP
Location: 204736 - 206133 (+)
Type: STP
Location: 204736 - 206133 (+)
Gene ID: MGYG000003208_18_176
Type: CAZyme
Location: 206145 - 207113 (+)
Type: CAZyme
Location: 206145 - 207113 (+)
Gene ID: MGYG000003208_18_177
Type:
Location: 207166 - 207927 (+)
Type:
Location: 207166 - 207927 (+)
Gene ID: MGYG000003208_18_178
Type: CAZyme
Location: 207973 - 209058 (+)
Type: CAZyme
Location: 207973 - 209058 (+)
Gene ID: MGYG000003208_18_179
Type:
Location: 209047 - 209652 (-)
Type:
Location: 209047 - 209652 (-)
Gene ID: MGYG000003208_18_180
Type: TC
Location: 209764 - 210942 (+)
Type: TC
Location: 209764 - 210942 (+)
Gene ID: MGYG000003208_18_181
Type: TC
Location: 210952 - 212760 (+)
Type: TC
Location: 210952 - 212760 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.