Cluster: MGYG000003208_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003208
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003208_18 | MGYG000003208_18_104 | 113857 | 116322 | - | GT51 |
| TC | MGYG000003208_18 | MGYG000003208_18_105 | 116540 | 117193 | + | 3.A.11.1.3 |
| pfam | MGYG000003208_18 | MGYG000003208_18_106 | 117190 | 117744 | + | PilN |
| pfam | MGYG000003208_18 | MGYG000003208_18_107 | 117741 | 118703 | + | PilO | PilP |
| TC | MGYG000003208_18 | MGYG000003208_18_108 | 118717 | 120099 | + | 1.B.22.2.1 |
Gene ID: MGYG000003208_18_104
Type: CAZyme
Location: 113857 - 116322 (-)
Type: CAZyme
Location: 113857 - 116322 (-)
Gene ID: MGYG000003208_18_105
Type: TC
Location: 116540 - 117193 (+)
Type: TC
Location: 116540 - 117193 (+)
Gene ID: MGYG000003208_18_106
Type: pfam
Location: 117190 - 117744 (+)
Type: pfam
Location: 117190 - 117744 (+)
Gene ID: MGYG000003208_18_107
Type: pfam
Location: 117741 - 118703 (+)
Type: pfam
Location: 117741 - 118703 (+)
Gene ID: MGYG000003208_18_108
Type: TC
Location: 118717 - 120099 (+)
Type: TC
Location: 118717 - 120099 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E extremaustralis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.