Cluster: MGYG000003189_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003189
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003189_2 | MGYG000003189_2_80 | 80622 | 81677 | + | GT9 |
| pfam | MGYG000003189_2 | MGYG000003189_2_81 | 81749 | 82093 | - | CMD |
| TF | MGYG000003189_2 | MGYG000003189_2_82 | 82197 | 83087 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000003189_2 | MGYG000003189_2_83 | 83163 | 85007 | + | 3.A.1.106.2 |
Gene ID: MGYG000003189_2_80
Type: CAZyme
Location: 80622 - 81677 (+)
Type: CAZyme
Location: 80622 - 81677 (+)
Gene ID: MGYG000003189_2_81
Type: pfam
Location: 81749 - 82093 (-)
Type: pfam
Location: 81749 - 82093 (-)
Gene ID: MGYG000003189_2_82
Type: TF
Location: 82197 - 83087 (+)
Type: TF
Location: 82197 - 83087 (+)
Gene ID: MGYG000003189_2_83
Type: TC
Location: 83163 - 85007 (+)
Type: TC
Location: 83163 - 85007 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_O
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003189_2_80 | vegetarian > omnivore | 1.50345 | 0.01553 |
| MGYG000003189_2_80 | vegetarian > vegan | 1.34897 | 0.02615 |
| MGYG000003189_2_81 | vegan > omnivore | 1.25908 | 0.00918 |
| MGYG000003189_2_81 | vegetarian > omnivore | 1.45534 | 0.01553 |
| MGYG000003189_2_82 | vegetarian > vegan | 1.18774 | 0.02615 |