Cluster: MGYG000003189_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003189
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003189_38 | MGYG000003189_38_8 | 10168 | 10425 | + | 8.A.8.1.1 |
| TC | MGYG000003189_38 | MGYG000003189_38_9 | 10504 | 12231 | + | 8.A.7.1.1 |
| TC | MGYG000003189_38 | MGYG000003189_38_10 | 12291 | 12791 | + | 4.A.1.1.1 |
| pfam | MGYG000003189_38 | MGYG000003189_38_11 | 12864 | 14063 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | MGYG000003189_38 | MGYG000003189_38_12 | 14186 | 17212 | + | GH2 |
Gene ID: MGYG000003189_38_8
Type: TC
Location: 10168 - 10425 (+)
Type: TC
Location: 10168 - 10425 (+)
Gene ID: MGYG000003189_38_9
Type: TC
Location: 10504 - 12231 (+)
Type: TC
Location: 10504 - 12231 (+)
Gene ID: MGYG000003189_38_10
Type: TC
Location: 12291 - 12791 (+)
Type: TC
Location: 12291 - 12791 (+)
Gene ID: MGYG000003189_38_11
Type: pfam
Location: 12864 - 14063 (+)
Type: pfam
Location: 12864 - 14063 (+)
Gene ID: MGYG000003189_38_12
Type: CAZyme
Location: 14186 - 17212 (+)
Type: CAZyme
Location: 14186 - 17212 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_O
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003189_38_8 | vegetarian > omnivore | 1.18732 | 0.01553 |
| MGYG000003189_38_10 | vegan > omnivore | 1.69581 | 0.00918 |
| MGYG000003189_38_10 | vegetarian > omnivore | 1.02023 | 0.01553 |