Cluster: MGYG000003189_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003189
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003189_36 | MGYG000003189_36_16 | 13520 | 13906 | - | 1.A.22.1.1 |
| TC | MGYG000003189_36 | MGYG000003189_36_17 | 13985 | 15361 | - | 2.A.38.1.1 |
| CAZyme | MGYG000003189_36 | MGYG000003189_36_18 | 15358 | 16173 | - | GT2 |
Gene ID: MGYG000003189_36_16
Type: TC
Location: 13520 - 13906 (-)
Type: TC
Location: 13520 - 13906 (-)
Gene ID: MGYG000003189_36_17
Type: TC
Location: 13985 - 15361 (-)
Type: TC
Location: 13985 - 15361 (-)
Gene ID: MGYG000003189_36_18
Type: CAZyme
Location: 15358 - 16173 (-)
Type: CAZyme
Location: 15358 - 16173 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_O
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003189_36_16 | vegan > omnivore | 1.58136 | 0.00918 |
| MGYG000003189_36_16 | vegetarian > omnivore | 2.87555 | 0.01553 |
| MGYG000003189_36_16 | vegetarian > vegan | 1.29419 | 0.02615 |
| MGYG000003189_36_17 | vegetarian > omnivore | 1.32028 | 0.01077 |
| MGYG000003189_36_18 | vegan > omnivore | 1.58358 | 0.00918 |