Cluster: MGYG000003189_CGC14
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000003189
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003189_15 | MGYG000003189_15_28 | 29256 | 30026 | + | GT25 |
| NULL(UNKNOWN) | MGYG000003189_15 | MGYG000003189_15_29 | 30035 | 31234 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003189_15 | MGYG000003189_15_30 | 31227 | 32108 | + | GT2 |
| CAZyme | MGYG000003189_15 | MGYG000003189_15_31 | 32132 | 32935 | + | GT2 |
| CAZyme | MGYG000003189_15 | MGYG000003189_15_32 | 32969 | 34078 | + | GH103 |
| pfam | MGYG000003189_15 | MGYG000003189_15_33 | 34158 | 35297 | + | Cytochrom_C | CCP_MauG |
| STP | MGYG000003189_15 | MGYG000003189_15_34 | 35397 | 36512 | + | Peripla_BP_2 |
| TC | MGYG000003189_15 | MGYG000003189_15_35 | 36528 | 37577 | + | 3.A.1.14.5 |
| TC | MGYG000003189_15 | MGYG000003189_15_36 | 37577 | 38350 | + | 3.A.1.14.19 |
Gene ID: MGYG000003189_15_28
Type: CAZyme
Location: 29256 - 30026 (+)
Type: CAZyme
Location: 29256 - 30026 (+)
Gene ID: MGYG000003189_15_29
Type:
Location: 30035 - 31234 (+)
Type:
Location: 30035 - 31234 (+)
Gene ID: MGYG000003189_15_30
Type: CAZyme
Location: 31227 - 32108 (+)
Type: CAZyme
Location: 31227 - 32108 (+)
Gene ID: MGYG000003189_15_31
Type: CAZyme
Location: 32132 - 32935 (+)
Type: CAZyme
Location: 32132 - 32935 (+)
Gene ID: MGYG000003189_15_32
Type: CAZyme
Location: 32969 - 34078 (+)
Type: CAZyme
Location: 32969 - 34078 (+)
Gene ID: MGYG000003189_15_33
Type: pfam
Location: 34158 - 35297 (+)
Type: pfam
Location: 34158 - 35297 (+)
Gene ID: MGYG000003189_15_34
Type: STP
Location: 35397 - 36512 (+)
Type: STP
Location: 35397 - 36512 (+)
Gene ID: MGYG000003189_15_35
Type: TC
Location: 36528 - 37577 (+)
Type: TC
Location: 36528 - 37577 (+)
Gene ID: MGYG000003189_15_36
Type: TC
Location: 37577 - 38350 (+)
Type: TC
Location: 37577 - 38350 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_O
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003189_15_30 | vegetarian > omnivore | 1.94734 | 0.01553 |
| MGYG000003189_15_30 | vegetarian > vegan | 1.40132 | 0.02615 |
| MGYG000003189_15_34 | vegan > omnivore | 1.58723 | 0.00918 |
| MGYG000003189_15_34 | vegetarian > omnivore | 1.06919 | 0.01553 |