Cluster: MGYG000003187_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003187_1 | MGYG000003187_1_386 | 429351 | 430934 | + | 2.A.2.5.2 |
| CAZyme | MGYG000003187_1 | MGYG000003187_1_387 | 430939 | 432078 | + | GH105 |
| pfam | MGYG000003187_1 | MGYG000003187_1_388 | 432157 | 433890 | - | tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1 |
| pfam | MGYG000003187_1 | MGYG000003187_1_389 | 434062 | 434625 | + | YecM |
| TC | MGYG000003187_1 | MGYG000003187_1_390 | 434710 | 435453 | + | 9.B.158.1.2 |
Gene ID: MGYG000003187_1_386
Type: TC
Location: 429351 - 430934 (+)
Type: TC
Location: 429351 - 430934 (+)
Gene ID: MGYG000003187_1_387
Type: CAZyme
Location: 430939 - 432078 (+)
Type: CAZyme
Location: 430939 - 432078 (+)
Gene ID: MGYG000003187_1_388
Type: pfam
Location: 432157 - 433890 (-)
Type: pfam
Location: 432157 - 433890 (-)
Gene ID: MGYG000003187_1_389
Type: pfam
Location: 434062 - 434625 (+)
Type: pfam
Location: 434062 - 434625 (+)
Gene ID: MGYG000003187_1_390
Type: TC
Location: 434710 - 435453 (+)
Type: TC
Location: 434710 - 435453 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_1_386 | vegetarian > omnivore | 2.24825 | 0.02685 |
| MGYG000003187_1_386 | vegetarian > vegan | 1.21695 | 0.03778 |
| MGYG000003187_1_387 | vegetarian > omnivore | 1.49776 | 0.03400 |